C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caldesmon 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079391 Cald1-002 ENSMUSG00000029761 10090 + 6:34598500-34775454 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLungPlacentaTestisENSMUST00000079391
Transcript ID Breast Colon Lung Placenta Testis
ENSMUST00000079391 3.167±0.00 4.133±0.00 3.901±0.00 15.141±0.00 0.872±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024W CIL_00024W_0003 CGP 6:34476207-34775473
CIL_0002H0 CIL_0002H0_0002 CGP 6:34598500-34859459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0005516 IEA calmodulin binding
GO:0006936 IEA muscle contraction
GO:0006940 TAS regulation of smooth muscle contraction
GO:0016020 IDA membrane
GO:0017022 IEA myosin binding
GO:0030478 IDA actin cap

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361675 CALD1-005 protein_coding Homo_sapiens 0 1208
ENST00000361901 CALD1-001 protein_coding Homo_sapiens 0 1757
ENST00000393118 CALD1-201 protein_coding Homo_sapiens 0 1208
ENST00000417172 CALD1-002 protein_coding Homo_sapiens 0 1725
ENST00000422748 CALD1-003 protein_coding Homo_sapiens 0 1223
ENST00000424922 CALD1-010 protein_coding Homo_sapiens 0 1644
ENST00000430085 CALD1-004 nonsense_mediated_decay Homo_sapiens 0 1321
ENST00000436461 CALD1-012 protein_coding Homo_sapiens 0 1404
ENST00000443197 CALD1-009 nonsense_mediated_decay Homo_sapiens 0 1459
ENST00000466704 CALD1-015 processed_transcript Homo_sapiens 0 684
ENST00000472096 CALD1-024 retained_intron Homo_sapiens 0 342
ENST00000473714 CALD1-025 retained_intron Homo_sapiens 0 257
ENST00000478075 CALD1-023 processed_transcript Homo_sapiens 3e-31 137
ENST00000480638 CALD1-028 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000482470 CALD1-008 retained_intron Homo_sapiens 0 1463
ENST00000495522 CALD1-029 protein_coding Homo_sapiens 0 1223

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