C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00024W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070826-ENSDARG00000086391 CGP 7955 25:20611023-20707283
GeneTranscriptPositionBiotype
ENSDARG00000070826 (bpgm)
2,3-bisphosphoglycerate mutase 		ENSDART00000104304 (bpgm-001) 20611023-20618644 protein_coding
ENSDARG00000086391 (cald1)
caldesmon 1 		ENSDART00000121989 (cald1-201) 20651846-20707283 protein_coding
ENSDART00000142781 (cald1-001) 20680326-20703235 protein_coding
CIL_00024W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172331-ENSG00000122786 CGP 9606 7:134646808-134970728
GeneTranscriptPositionBiotype
ENSG00000122786 (CALD1)
caldesmon 1 		ENST00000361675 (CALD1-005) 134779650-134969346 protein_coding
ENST00000361901 (CALD1-001) 134779678-134970641 protein_coding
ENST00000393118 (CALD1-201) 134891400-134970728 protein_coding
ENST00000417172 (CALD1-002) 134744252-134968402 protein_coding
ENST00000422748 (CALD1-003) 134779420-134968859 protein_coding
ENST00000424922 (CALD1-010) 134891610-134968859 protein_coding
ENST00000430085 (CALD1-004) 134779637-134968653 nonsense_mediated_decay
ENST00000435928 (CALD1-020) 134866841-134928900 protein_coding
ENST00000436461 (CALD1-012) 134745467-134960056 protein_coding
ENST00000443197 (CALD1-009) 134891458-134970641 nonsense_mediated_decay
ENST00000445569 (CALD1-027) 134843884-134933123 protein_coding
ENST00000454108 (CALD1-017) 134779625-134928900 protein_coding
ENST00000462181 (CALD1-016) 134779639-134822061 processed_transcript
ENST00000466704 (CALD1-015) 134950375-134968875 processed_transcript
ENST00000472096 (CALD1-024) 134941182-134948102 retained_intron
ENST00000473714 (CALD1-025) 134960531-134965437 retained_intron
ENST00000475772 (CALD1-019) 134779634-134868241 retained_intron
ENST00000478075 (CALD1-023) 134941141-134944551 processed_transcript
ENST00000480638 (CALD1-028) 134965211-134968723 retained_intron
ENST00000482470 (CALD1-008) 134779650-134962389 retained_intron
ENST00000489019 (CALD1-026) 134843884-134900053 processed_transcript
ENST00000495522 (CALD1-029) 134891610-134968859 protein_coding
ENST00000496024 (CALD1-021) 134920566-134933242 processed_transcript
ENST00000498254 (CALD1-018) 134779715-134867975 retained_intron
ENSG00000172331 (BPGM)
2,3-bisphosphoglycerate mutase 		ENST00000344924 (BPGM-001) 134646808-134679813 protein_coding
ENST00000393132 (BPGM-004) 134646831-134679813 protein_coding
ENST00000418040 (BPGM-003) 134646811-134679808 protein_coding
ENST00000443095 (BPGM-005) 134660421-134661741 protein_coding
ENSG00000224375 (AC009276.4)
 ENST00000422042 (AC009276.4-001) 134684144-134687990 lincRNA
CIL_00024W_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038871-ENSMUSG00000029761 CGP 10090 6:34476207-34775473
GeneTranscriptPositionBiotype
ENSMUSG00000038871 (Bpgm)
2,3-bisphosphoglycerate mutase 		ENSMUST00000045372 (Bpgm-001) 34476207-34505613 protein_coding
ENSMUST00000135743 (Bpgm-002) 34476356-34489083 retained_intron
ENSMUST00000138668 (Bpgm-004) 34476452-34487687 protein_coding
ENSMUST00000139067 (Bpgm-003) 34476479-34487747 protein_coding
ENSMUST00000149131 (Bpgm-005) 34477142-34487848 protein_coding
ENSMUSG00000085187 (Gm13860)
predicted gene 13860 		ENSMUST00000125185 (Gm13860-001) 34533553-34541387 lincRNA
ENSMUSG00000085382 (Gm13861)
predicted gene 13861 		ENSMUST00000137136 (Gm13861-001) 34651354-34653894 lincRNA
ENSMUSG00000086834 (Gm14547)
predicted gene 14547 		ENSMUST00000138341 (Gm14547-001) 34727221-34735389 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024W_0001ENSDARG00000070826ENSDART00000104304ENSDARG00000086391ENSDART00000121989ENSDART00000142781CIL_00024W_0002ENSG00000122786ENST00000361675ENST00000361901ENST00000393118ENST00000417172ENST00000422748ENST00000424922ENST00000430085ENST00000435928ENST00000436461ENST00000443197ENST00000445569ENST00000454108ENST00000462181ENST00000466704ENST00000472096ENST00000473714ENST00000475772ENST00000478075ENST00000480638ENST00000482470ENST00000489019ENST00000495522ENST00000496024ENST00000498254ENSG00000172331ENST00000344924ENST00000393132ENST00000418040ENST00000443095ENSG00000224375ENST00000422042CIL_00024W_0003ENSMUSG00000038871ENSMUST00000045372ENSMUST00000135743ENSMUST00000138668ENSMUST00000139067ENSMUST00000149131ENSMUSG00000085187ENSMUST00000125185ENSMUSG00000085382ENSMUST00000137136ENSMUSG00000086834ENSMUST00000138341
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024W_0001ENSDARG00000070826ENSDART00000104304ENSDARG00000086391ENSDART00000121989CIL_00024W_0002ENSG00000122786ENST00000361675ENST00000361901ENST00000393118ENST00000443197ENST00000454108ENST00000472096ENST00000482470ENSG00000172331ENST00000344924ENSG00000224375ENST00000422042CIL_00024W_0003ENSMUSG00000038871ENSMUST00000045372ENSMUST00000138668ENSMUST00000139067ENSMUST00000149131ENSMUSG00000085187ENSMUST00000125185ENSMUSG00000085382ENSMUST00000137136ENSMUSG00000086834ENSMUST00000138341
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070826 ENSDART00000104304 N/A N/A N/A 12.654±5.32 N/A N/A 16.937±6.36 2.521±0.50 N/A N/A 6.118±0.00 N/A N/A N/A
ENSDARG00000086391 ENSDART00000121989 N/A N/A N/A 0.523±0.64 N/A N/A 2.059±1.72 0.562±0.33 0.187±0.00 N/A 0.594±0.00 N/A N/A N/A
ENSDART00000142781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122786 ENST00000361675 N/A N/A N/A N/A N/A N/A N/A 12.116±0.00 N/A N/A N/A 7.363±0.00 N/A N/A
ENST00000361901 44.467±0.00 N/A 3.785±0.00 0.458±0.00 27.399±8.58 11.404±0.00 6.953±5.53 21.032±18.13 42.481±29.72 37.414±29.01 6.821±0.00 56.677±33.59 94.096±34.75 20.435±0.00
ENST00000393118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.222±0.00 N/A N/A
ENST00000417172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443197 N/A N/A N/A 0.779±0.00 13.380±0.00 N/A 9.185±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000445569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.227±0.00 N/A N/A N/A
ENST00000462181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.756±0.00 N/A N/A N/A
ENST00000473714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482470 N/A N/A N/A N/A N/A N/A 1.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000489019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172331 ENST00000344924 4.546±0.00 3.917±0.00 3.613±0.00 10.610±0.48 5.347±1.78 5.239±3.17 3.601±1.65 8.607±6.12 3.205±0.52 6.634±5.91 3.204±0.52 6.692±3.67 41.506±13.33 14.564±2.86
ENST00000393132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224375 ENST00000422042 N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038871 ENSMUST00000045372 5.692±0.14 4.140±0.55 14.215±1.93 18.636±9.51 4.432±1.74 12.018±0.74 15.363±11.51 14.206±1.24 45.734±47.22 12.138±2.60 31.879±17.08 7.872±2.02 8.162±6.17 24.239±9.79
ENSMUST00000135743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138668 N/A 1.884±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.278±0.00 N/A 65.051±0.00
ENSMUST00000149131 N/A N/A N/A N/A 7.146±0.00 N/A N/A N/A N/A N/A N/A 5.119±0.00 N/A 33.956±5.69
ENSMUSG00000085187 ENSMUST00000125185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.239±0.06 N/A 0.156±0.00
ENSMUSG00000085382 ENSMUST00000137136 0.903±0.29 0.899±0.34 2.274±0.99 0.204±0.10 0.298±0.10 0.435±0.10 0.289±0.06 0.636±0.22 0.025±0.00 0.226±0.12 1.022±0.49 0.712±0.56 0.085±0.00 0.149±0.04
ENSMUSG00000086834 ENSMUST00000138341 N/A N/A 0.036±0.00 N/A 0.454±0.00 N/A N/A N/A 0.313±0.09 N/A N/A N/A 0.363±0.40 0.254±0.08

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