C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029836 Cbx3 10090 + 6:51470360-51483704 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031862 Cbx3-002 51470530-51483704 protein_coding
  ENSMUST00000094623 Cbx3-001 51470360-51483033 protein_coding
  ENSMUST00000114445 Cbx3-004 51470666-51483704 protein_coding
  ENSMUST00000114446 Cbx3-005 51470695-51483704 protein_coding
  ENSMUST00000141711 Cbx3-007 51470746-51478600 protein_coding
  ENSMUST00000153699 Cbx3-006 51470677-51472060 retained_intron
  ENSMUST00000156463 Cbx3-003 51470663-51475241 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031862ENSMUST00000094623ENSMUST00000114445ENSMUST00000114446ENSMUST00000156463
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031862 3.030±1.67 5.454±0.29 33.612±0.00 28.064±10.31 2.722±1.08 3.265±0.66 1.367±0.48 3.345±1.47 17.193±19.08 3.729±1.27 15.614±0.54 7.990±9.05 44.701±24.39 9.898±0.00
ENSMUST00000094623 3.246±0.00 N/A N/A N/A N/A 2.789±0.00 N/A N/A N/A N/A N/A 5.284±0.00 N/A N/A
ENSMUST00000114445 0.736±0.00 N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114446 4.535±1.09 N/A N/A 23.045±11.42 3.596±1.63 3.140±0.00 4.949±1.14 4.842±2.43 10.490±8.22 6.903±2.01 N/A 23.791±13.66 22.585±12.89 N/A
ENSMUST00000156463 1.493±0.71 5.342±1.02 N/A N/A 2.171±1.36 2.322±0.71 N/A 1.391±0.38 0.539±0.18 2.774±0.76 N/A 4.570±0.79 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y0 CIL_0007Y0_0002 VISTA 6:50872427-51473473
CIL_0007VE CIL_0007VE_0002 VISTA 6:50894712-51498223
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0002CO CIL_0002CO_0002 CGP 6:51460434-51483704
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0002CN CIL_0002CN_0002 CGP 6:51470360-51590679

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0005720 IEA nuclear heterochromatin
GO:0005819 IEA spindle
GO:0019899 IEA enzyme binding
GO:0019904 IEA protein domain specific binding
GO:0042802 IEA identical protein binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:1990226 IEA histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003860 cbx3a chromobox homolog 3a (HP1 gamma homolog, Drosophila) protein_coding Danio_rerio
ENSG00000122565 CBX3 chromobox homolog 3 protein_coding Homo_sapiens

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