C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031862 Cbx3-002 ENSMUSG00000029836 10090 + 6:51470530-51483704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031862 3.030±1.67 5.454±0.29 33.612±0.00 28.064±10.31 2.722±1.08 3.265±0.66 1.367±0.48 3.345±1.47 17.193±19.08 3.729±1.27 15.614±0.54 7.990±9.05 44.701±24.39 9.898±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y0 CIL_0007Y0_0002 VISTA 6:50872427-51473473
CIL_0007VE CIL_0007VE_0002 VISTA 6:50894712-51498223
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0002CO CIL_0002CO_0002 CGP 6:51460434-51483704
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0002CN CIL_0002CN_0002 CGP 6:51470360-51590679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005515 IEA protein binding
GO:0005719 IEA nuclear euchromatin
GO:0005720 IEA nuclear heterochromatin
GO:0005819 IEA spindle
GO:0019899 IEA enzyme binding
GO:0019904 IEA protein domain specific binding
GO:0042802 IEA identical protein binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:1990226 IEA histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086985 cbx5-201 protein_coding Danio_rerio 7e-27 126
ENSDART00000133259 cbx5-003 protein_coding Danio_rerio 7e-27 126
ENSDART00000142760 cbx5-005 protein_coding Danio_rerio 7e-27 126
ENSDART00000143340 cbx5-001 protein_coding Danio_rerio 7e-27 126
ENSDART00000147598 cbx5-006 protein_coding Danio_rerio 1e-24 119
ENST00000325243 CBX3P1-001 processed_pseudogene Homo_sapiens 0 628
ENST00000337620 CBX3-001 protein_coding Homo_sapiens 0 931
ENST00000396386 CBX3-002 protein_coding Homo_sapiens 0 968
ENST00000402326 CBX3P9-001 processed_pseudogene Homo_sapiens 0 665
ENST00000409747 CBX3-003 protein_coding Homo_sapiens 0 579
ENST00000430257 CBX3P6-001 processed_pseudogene Homo_sapiens 0 385
ENST00000456948 CBX3-004 protein_coding Homo_sapiens 0 285
ENST00000462165 CBX3-006 protein_coding Homo_sapiens 0 444
ENST00000481057 CBX3-005 retained_intron Homo_sapiens 0 608
ENST00000481300 CBX3-007 retained_intron Homo_sapiens 0 322
ENST00000497498 CBX3-008 processed_transcript Homo_sapiens 0 558
ENST00000508108 CBX3P3-001 processed_pseudogene Homo_sapiens 0 521
ENST00000532412 CBX3P8-001 processed_pseudogene Homo_sapiens 0 438
ENST00000538909 CBX3P4-001 transcribed_processed_pseudogene Homo_sapiens 0 327
ENST00000552017 CBX3P5-001 processed_pseudogene Homo_sapiens 0 544

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