C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031894 Clcn1-001 ENSMUSG00000029862 10090 + 6:42286685-42314656 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastKidneyLungMuscleOvaryENSMUST00000031894
Transcript ID Adrenal Breast Kidney Lung Muscle Ovary
ENSMUST00000031894 0.030±0.00 3.611±1.07 0.160±0.00 0.096±0.01 34.981±2.53 0.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VM CIL_0006VM_0002 CGP 6:42264985-42315756
CIL_0006VN CIL_0006VN_0002 CGP 6:42286685-42324643

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0006821 IMP chloride transport
GO:0019227 IMP neuronal action potential propagation
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042383 IDA sarcolemma
GO:0044070 IEA regulation of anion transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265593 CLCN2-001 protein_coding Homo_sapiens 6e-40 171
ENST00000343257 CLCN1-001 protein_coding Homo_sapiens 0 3145
ENST00000344937 CLCN2-004 protein_coding Homo_sapiens 7e-29 134
ENST00000430397 CLCN2-006 nonsense_mediated_decay Homo_sapiens 4e-29 134
ENST00000432192 CLCN1-002 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000434054 CLCN2-003 protein_coding Homo_sapiens 5e-40 171
ENST00000455478 CLCN1-003 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000457512 CLCN2-002 protein_coding Homo_sapiens 5e-40 171
ENST00000495612 CLCN1-004 processed_transcript Homo_sapiens 7.00649e-44 180

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