C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114684 Clcn1-008 ENSMUSG00000029862 10090 + 6:42298900-42315756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000114684
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000114684 0.033±0.01 0.060±0.01 4.296±0.50 7.544±1.10 0.063±0.00 3.378±0.48 0.029±0.00 0.027±0.01 0.183±0.04 27.167±1.79 0.137±0.09 0.061±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VM CIL_0006VM_0002 CGP 6:42264985-42315756
CIL_0006VN CIL_0006VN_0002 CGP 6:42286685-42324643

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0006821 IMP chloride transport
GO:0016021 IEA integral component of membrane
GO:0019227 IMP neuronal action potential propagation
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0042383 IDA sarcolemma
GO:0044070 IEA regulation of anion transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265593 CLCN2-001 protein_coding Homo_sapiens 6e-40 171
ENST00000343257 CLCN1-001 protein_coding Homo_sapiens 0 1531
ENST00000344937 CLCN2-004 protein_coding Homo_sapiens 7e-29 134
ENST00000409222 FAM131B-004 protein_coding Homo_sapiens 0.00000003 66
ENST00000409346 FAM131B-002 protein_coding Homo_sapiens 0 313
ENST00000409408 FAM131B-005 protein_coding Homo_sapiens 0 311
ENST00000409578 FAM131B-003 protein_coding Homo_sapiens 0 313
ENST00000410085 FAM131B-006 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000430397 CLCN2-006 nonsense_mediated_decay Homo_sapiens 4e-29 134
ENST00000434054 CLCN2-003 protein_coding Homo_sapiens 5e-40 171
ENST00000443739 FAM131B-001 protein_coding Homo_sapiens 0 315
ENST00000457512 CLCN2-002 protein_coding Homo_sapiens 5e-40 171

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