C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane and coiled coil domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030126 Tmcc1 10090 - 6:116018618-116193486 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032222 Tmcc1-003 116021344-116134320 protein_coding
  ENSMUST00000088896 Tmcc1-001 116018618-116193486 protein_coding
  ENSMUST00000172510 Tmcc1-008 116021347-116057011 protein_coding
  ENSMUST00000172909 Tmcc1-005 116043768-116133903 nonsense_mediated_decay
  ENSMUST00000173031 Tmcc1-002 116131665-116171697 protein_coding
  ENSMUST00000173110 Tmcc1-004 116021618-116134430 nonsense_mediated_decay
  ENSMUST00000173117 Tmcc1-006 116043768-116107567 retained_intron
  ENSMUST00000173140 Tmcc1-009 116043172-116056955 protein_coding
  ENSMUST00000173548 Tmcc1-007 116043036-116073156 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032222ENSMUST00000088896ENSMUST00000172510ENSMUST00000173031ENSMUST00000173110ENSMUST00000173548
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032222 2.662±0.08 1.524±0.58 1.586±0.18 N/A 3.683±0.63 3.099±1.05 2.122±0.15 1.717±0.18 2.047±1.07 3.355±0.00 3.946±0.48 2.502±1.01 6.010±3.82 38.629±13.34
ENSMUST00000088896 5.850±1.02 2.714±0.29 3.783±0.25 8.985±5.80 5.040±0.85 4.720±0.26 2.426±0.51 2.988±0.22 1.626±0.27 6.046±1.47 2.145±0.35 6.964±0.99 2.065±0.89 10.993±5.21
ENSMUST00000172510 N/A N/A N/A 4.644±2.12 N/A N/A N/A N/A 1.495±0.97 N/A N/A 1.169±0.00 N/A N/A
ENSMUST00000173031 N/A 2.574±0.00 N/A N/A N/A 7.937±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173110 N/A 1.770±0.53 N/A 3.444±0.00 N/A 2.155±0.14 N/A N/A 2.349±0.65 N/A N/A 2.513±1.20 3.008±1.21 6.984±0.00
ENSMUST00000173548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.229±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000315 CIL_000315_0002 CGP 6:115954811-116193486

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060954 tmcc1b transmembrane and coiled-coil domain family 1b protein_coding Danio_rerio
ENSDARG00000076747 TMCC1 (2 of 2) transmembrane and coiled-coil domain family 1 protein_coding Danio_rerio
ENSG00000172765 TMCC1 transmembrane and coiled-coil domain family 1 protein_coding Homo_sapiens

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