C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier organic anion transporter family, member 1c1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032362 Slco1c1-001 ENSMUSG00000030235 10090 + 6:141524386-141570177 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartMusclePlacentaENSMUST00000032362
Transcript ID Bladder Brain Heart Muscle Placenta
ENSMUST00000032362 0.018±0.00 1.095±0.46 0.037±0.00 0.039±0.01 0.013±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZU CIL_0007ZU_0002 VISTA 6:140994807-141595982
CIL_0005FM CIL_0005FM_0002 CGP 6:141249269-141570177
CIL_0005PX CIL_0005PX_0002 CGP 6:141524386-141686646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 IEA plasma membrane
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039083 slco1c1-201 protein_coding Danio_rerio 1e-21 110
ENSDART00000134442 slco1c1-001 protein_coding Danio_rerio 1e-21 110
ENST00000266509 SLCO1C1-001 protein_coding Homo_sapiens 0 2270
ENST00000534996 SLCO1C1-006 processed_transcript Homo_sapiens 0 198
ENST00000539415 SLCO1C1-003 nonsense_mediated_decay Homo_sapiens 0 1528
ENST00000540354 SLCO1C1-002 protein_coding Homo_sapiens 0 1448
ENST00000545102 SLCO1C1-004 protein_coding Homo_sapiens 0 1629
ENST00000545604 SLCO1C1-010 protein_coding Homo_sapiens 0 1921

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