C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier organic anion transporter family, member 1c1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135562 Slco1c1-002 ENSMUSG00000030235 10090 + 6:141524386-141569720 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000135562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000135562 0.027±0.02 0.077±0.05 0.020±0.02 2.676±1.73 0.093±0.06 0.078±0.00 0.074±0.03 0.039±0.02 0.016±0.01 0.088±0.05 0.022±0.00 0.068±0.03 0.028±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZU CIL_0007ZU_0002 VISTA 6:140994807-141595982
CIL_0005FM CIL_0005FM_0002 CGP 6:141249269-141570177
CIL_0005PX CIL_0005PX_0002 CGP 6:141524386-141686646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039083 slco1c1-201 protein_coding Danio_rerio 1e-21 110
ENSDART00000134442 slco1c1-001 protein_coding Danio_rerio 1e-21 110
ENST00000266509 SLCO1C1-001 protein_coding Homo_sapiens 0 1544
ENST00000534996 SLCO1C1-006 processed_transcript Homo_sapiens 0 198
ENST00000539415 SLCO1C1-003 nonsense_mediated_decay Homo_sapiens 0 920
ENST00000540354 SLCO1C1-002 protein_coding Homo_sapiens 0 723
ENST00000545102 SLCO1C1-004 protein_coding Homo_sapiens 0 1022
ENST00000545604 SLCO1C1-010 protein_coding Homo_sapiens 0 1314

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