C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcospan
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032383 Sspn-001 ENSMUSG00000030255 10090 + 6:145934122-145965223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032383
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032383 11.558±2.02 8.903±0.70 19.829±3.04 0.794±0.37 10.197±1.72 3.924±0.15 35.686±1.44 1.712±0.19 0.214±0.09 7.240±0.19 16.349±3.40 10.098±2.79 0.351±0.37 0.531±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004X9 CIL_0004X9_0002 CGP 6:145858243-145965223
CIL_0004XE CIL_0004XE_0002 CGP 6:145931641-146502223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0030133 IEA transport vesicle
GO:0042383 IDA sarcolemma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242729 SSPN-001 protein_coding Homo_sapiens 0 667
ENST00000422622 SSPN-003 protein_coding Homo_sapiens 0 457
ENST00000538142 SSPN-007 protein_coding Homo_sapiens 0 429
ENST00000540266 SSPN-009 protein_coding Homo_sapiens 0 457

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