C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: methyl-CpG binding domain protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030322 Mbd4 10090 - 6:115840697-115853371 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032469 Mbd4-001 115840697-115853371 protein_coding
  ENSMUST00000122816 Mbd4-003 115847913-115853288 retained_intron
  ENSMUST00000133830 Mbd4-004 115841199-115848705 processed_transcript
  ENSMUST00000147282 Mbd4-002 115842344-115853365 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032469ENSMUST00000122816ENSMUST00000133830ENSMUST00000147282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032469 0.301±0.06 0.198±0.13 0.583±0.08 1.388±0.19 0.377±0.05 0.374±0.13 0.200±0.12 0.278±0.07 1.017±0.86 0.463±0.14 0.214±0.08 0.719±0.35 1.057±0.55 1.584±0.43
ENSMUST00000122816 0.242±0.05 N/A N/A 1.012±0.00 0.581±0.17 0.074±0.00 0.296±0.00 0.355±0.13 1.271±1.09 N/A 0.190±0.08 0.688±0.34 0.859±0.36 N/A
ENSMUST00000133830 0.395±0.00 0.371±0.10 N/A 1.001±0.00 0.728±0.21 0.440±0.00 0.107±0.01 0.334±0.09 0.156±0.02 0.477±0.13 0.137±0.00 0.598±0.26 N/A N/A
ENSMUST00000147282 N/A 0.338±0.15 N/A N/A 0.327±0.09 0.267±0.15 0.150±0.00 0.198±0.00 0.470±0.41 N/A 0.116±0.00 0.454±0.23 0.505±0.16 2.738±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0002 CGP 6:115810729-115853371
CIL_00030Y CIL_00030Y_0002 CGP 6:115840697-115926699

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006284 IEA base-excision repair
GO:0006306 TAS DNA methylation
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007095 IMP mitotic G2 DNA damage checkpoint
GO:0008263 IEA pyrimidine-specific mismatch base pair DNA N-glycosylase activity
GO:0008630 IMP intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009314 IMP response to radiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000129071 MBD4 methyl-CpG binding domain protein 4 protein_coding Homo_sapiens

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