C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030539 Sema4b 10090 + 7:80186841-80226394 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032754 Sema4b-001 80186841-80226394 protein_coding
  ENSMUST00000107383 Sema4b-002 80186841-80221832 protein_coding
  ENSMUST00000123023 Sema4b-003 80198538-80214065 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032754ENSMUST00000107383
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032754 8.235±1.64 27.546±1.14 7.479±0.23 5.043±1.69 14.121±4.20 30.313±2.02 4.080±0.36 9.461±2.01 2.907±1.83 7.202±0.42 0.476±0.13 22.328±6.75 12.691±11.53 1.700±0.83
ENSMUST00000107383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.183±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079J CIL_00079J_0002 CGP 7:80094846-80226394
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500
CIL_0000SV CIL_0000SV_0002 CGP 7:80186841-80232813

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074414 sema4ba sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba protein_coding Danio_rerio
ENSDARG00000076104 SEMA4B (2 of 2) sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B protein_coding Danio_rerio
ENSG00000185033 SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B protein_coding Homo_sapiens

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