C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032754 Sema4b-001 ENSMUSG00000030539 10090 + 7:80186841-80226394 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032754
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032754 8.235±1.64 27.546±1.14 7.479±0.23 5.043±1.69 14.121±4.20 30.313±2.02 4.080±0.36 9.461±2.01 2.907±1.83 7.202±0.42 0.476±0.13 22.328±6.75 12.691±11.53 1.700±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079J CIL_00079J_0002 CGP 7:80094846-80226394
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500
CIL_0000SV CIL_0000SV_0002 CGP 7:80186841-80232813

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113037 SEMA4C-201 protein_coding Danio_rerio 0.000005 58
ENST00000332496 SEMA4B-002 protein_coding Homo_sapiens 0 2250
ENST00000411539 SEMA4B-001 protein_coding Homo_sapiens 0 2250
ENST00000558051 SEMA4B-014 processed_transcript Homo_sapiens 0 433
ENST00000558065 SEMA4B-004 retained_intron Homo_sapiens 0 1943
ENST00000558848 SEMA4B-012 retained_intron Homo_sapiens 0 196
ENST00000559300 SEMA4B-011 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000560089 SEMA4B-003 nonsense_mediated_decay Homo_sapiens 0 2185
ENST00000561085 SEMA4B-010 protein_coding Homo_sapiens 0 403

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