C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synemin, intermediate filament protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074233 Synm-202 ENSMUSG00000030554 10090 - 7:67730161-67759742 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000074233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000074233 1.587±0.61 1.029±0.15 36.855±8.61 0.854±0.58 1.069±0.47 8.508±0.97 0.429±0.12 0.272±0.07 0.085±0.06 3.210±0.26 2.568±1.32 0.348±0.49 0.891±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073W CIL_00073W_0002 CGP 7:67647410-67759742
CIL_0008TF CIL_0008TF_0002 VISTA 7:67710091-68313211

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 ISS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005882 ISS intermediate filament
GO:0005912 ISS adherens junction
GO:0008150 ND biological_process
GO:0008307 ISS structural constituent of muscle
GO:0016020 IDA membrane
GO:0017166 ISS vinculin binding
GO:0019215 IDA intermediate filament binding
GO:0043034 ISS costamere
GO:0060053 IDA neurofilament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328642 SYNM-004 protein_coding Homo_sapiens 0 1155
ENST00000336292 SYNM-001 protein_coding Homo_sapiens 0 2702
ENST00000560674 SYNM-003 protein_coding Homo_sapiens 0 1517
ENST00000594047 SYNM-002 protein_coding Homo_sapiens 0 2442

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