C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synemin, intermediate filament protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051389 Synm-201 ENSMUSG00000030554 10090 - 7:67730161-67759742 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051389
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051389 2.863±1.59 1.075±0.31 105.335±13.22 3.547±2.67 5.763±4.98 15.536±4.01 0.995±0.08 0.426±0.08 0.050±0.03 5.764±0.74 91.034±39.47 5.329±2.95 0.560±0.84 1.551±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073W CIL_00073W_0002 CGP 7:67647410-67759742
CIL_0008TF CIL_0008TF_0002 VISTA 7:67710091-68313211

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 ISS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005882 ISS intermediate filament
GO:0005912 ISS adherens junction
GO:0008150 ND biological_process
GO:0008307 ISS structural constituent of muscle
GO:0016020 IDA membrane
GO:0017166 ISS vinculin binding
GO:0019215 IDA intermediate filament binding
GO:0043034 ISS costamere
GO:0060053 IDA neurofilament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328642 SYNM-004 protein_coding Homo_sapiens 0 1155
ENST00000336292 SYNM-001 protein_coding Homo_sapiens 0 2442
ENST00000560674 SYNM-003 protein_coding Homo_sapiens 0 1639
ENST00000594047 SYNM-002 protein_coding Homo_sapiens 0 2564

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