C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: parvin, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030770 Parva 10090 + 7:112427505-112591692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033030 Parva-001 112427706-112591692 protein_coding
  ENSMUST00000106640 Parva-004 112519701-112588970 protein_coding
  ENSMUST00000106643 Parva-002 112427505-112589629 protein_coding
  ENSMUST00000123185 Parva-005 112501177-112547610 processed_transcript
  ENSMUST00000126047 Parva-006 112569250-112579659 processed_transcript
  ENSMUST00000139720 Parva-003 112427905-112552929 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000033030ENSMUST00000106640ENSMUST00000106643ENSMUST00000139720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000033030 20.329±9.26 5.448±0.32 69.317±4.08 4.945±3.53 8.951±1.46 11.582±2.15 7.303±0.13 15.885±0.00 0.603±0.11 18.591±2.71 9.616±1.80 15.828±3.91 0.505±0.13
ENSMUST00000106640 14.399±0.92 5.011±0.00 N/A N/A 5.446±0.00 10.816±1.67 3.421±0.01 13.241±2.51 6.205±0.00 N/A 11.599±2.02 29.793±20.54 1.318±0.24
ENSMUST00000106643 29.147±10.20 14.380±4.81 N/A 2.926±0.61 13.043±3.50 9.854±1.34 5.880±0.84 16.299±3.27 6.066±3.11 23.386±2.67 20.711±3.40 13.469±4.06 0.909±0.26
ENSMUST00000139720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.157±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0002 VISTA 7:111980454-112581088
CIL_0008YS CIL_0008YS_0002 VISTA 7:111997825-112599422
CIL_0007SQ CIL_0007SQ_0002 VISTA 7:112051476-112653289
CIL_0003PF CIL_0003PF_0002 CGP 7:112368308-112591692
CIL_0003PG CIL_0003PG_0002 CGP 7:112427505-112906807

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002040 IMP sprouting angiogenesis
GO:0003148 IMP outflow tract septum morphogenesis
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 IDA cell adhesion
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0008360 IEA regulation of cell shape
GO:0015629 IEA actin cytoskeleton
GO:0030027 IDA lamellipodium
GO:0031532 IEA actin cytoskeleton reorganization
GO:0034113 IMP heterotypic cell-cell adhesion
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0060271 ISS cilium morphogenesis
GO:0070252 IMP actin-mediated cell contraction
GO:0071670 IMP smooth muscle cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035629 parvab parvin, alpha b protein_coding Danio_rerio
ENSDARG00000043710 parvaa parvin, alpha a protein_coding Danio_rerio
ENSDARG00000073907 parvab parvin, alpha b protein_coding Danio_rerio
ENSG00000197702 PARVA parvin, alpha protein_coding Homo_sapiens

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