C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: parvin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033030 Parva-001 ENSMUSG00000030770 10090 + 7:112427706-112591692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000033030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000033030 20.329±9.26 5.448±0.32 69.317±4.08 4.945±3.53 8.951±1.46 11.582±2.15 7.303±0.13 15.885±0.00 0.603±0.11 18.591±2.71 9.616±1.80 15.828±3.91 0.505±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0002 VISTA 7:111980454-112581088
CIL_0008YS CIL_0008YS_0002 VISTA 7:111997825-112599422
CIL_0007SQ CIL_0007SQ_0002 VISTA 7:112051476-112653289
CIL_0003PF CIL_0003PF_0002 CGP 7:112368308-112591692
CIL_0003PG CIL_0003PG_0002 CGP 7:112427505-112906807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002040 IMP sprouting angiogenesis
GO:0003148 IMP outflow tract septum morphogenesis
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 IDA cell adhesion
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0008360 IEA regulation of cell shape
GO:0015629 IEA actin cytoskeleton
GO:0030027 IDA lamellipodium
GO:0031532 IEA actin cytoskeleton reorganization
GO:0034113 IMP heterotypic cell-cell adhesion
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0060271 ISS cilium morphogenesis
GO:0070252 IMP actin-mediated cell contraction
GO:0071670 IMP smooth muscle cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011351 parvab-001 protein_coding Danio_rerio 0 843
ENSDART00000056847 parvab-201 protein_coding Danio_rerio 0 843
ENSDART00000104069 parvaa-201 protein_coding Danio_rerio 0 745
ENSDART00000064187 parvaa-001 protein_coding Danio_rerio 0 745
ENST00000334956 PARVA-001 protein_coding Homo_sapiens 0 1637
ENST00000528916 PARVA-004 protein_coding Homo_sapiens 0 760
ENST00000533345 PARVA-003 retained_intron Homo_sapiens 0 774

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