C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: parvin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106640 Parva-004 ENSMUSG00000030770 10090 + 7:112519701-112588970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000106640
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000106640 14.399±0.92 5.011±0.00 5.446±0.00 10.816±1.67 3.421±0.01 13.241±2.51 6.205±0.00 11.599±2.02 29.793±20.54 1.318±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0002 VISTA 7:111980454-112581088
CIL_0008YS CIL_0008YS_0002 VISTA 7:111997825-112599422
CIL_0007SQ CIL_0007SQ_0002 VISTA 7:112051476-112653289
CIL_0003PF CIL_0003PF_0002 CGP 7:112368308-112591692
CIL_0003PG CIL_0003PG_0002 CGP 7:112427505-112906807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0007155 IDA cell adhesion
GO:0030027 IDA lamellipodium
GO:0031532 IEA actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011351 parvab-001 protein_coding Danio_rerio 0 813
ENSDART00000056847 parvab-201 protein_coding Danio_rerio 0 813
ENSDART00000104069 parvaa-201 protein_coding Danio_rerio 0 693
ENSDART00000064187 parvaa-001 protein_coding Danio_rerio 0 693
ENST00000334956 PARVA-001 protein_coding Homo_sapiens 0 1336
ENST00000528916 PARVA-004 protein_coding Homo_sapiens 0 811
ENST00000533345 PARVA-003 retained_intron Homo_sapiens 0 774

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