C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: parvin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106643 Parva-002 ENSMUSG00000030770 10090 + 7:112427505-112589629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106643
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106643 29.147±10.20 14.380±4.81 2.926±0.61 13.043±3.50 9.854±1.34 5.880±0.84 16.299±3.27 6.066±3.11 23.386±2.67 20.711±3.40 13.469±4.06 0.909±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0002 VISTA 7:111980454-112581088
CIL_0008YS CIL_0008YS_0002 VISTA 7:111997825-112599422
CIL_0007SQ CIL_0007SQ_0002 VISTA 7:112051476-112653289
CIL_0003PF CIL_0003PF_0002 CGP 7:112368308-112591692
CIL_0003PG CIL_0003PG_0002 CGP 7:112427505-112906807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002040 IMP sprouting angiogenesis
GO:0003148 IMP outflow tract septum morphogenesis
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 IDA cell adhesion
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0008360 IEA regulation of cell shape
GO:0030027 IDA lamellipodium
GO:0031532 IEA actin cytoskeleton reorganization
GO:0034113 IMP heterotypic cell-cell adhesion
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0060271 ISS cilium morphogenesis
GO:0070252 IMP actin-mediated cell contraction
GO:0071670 IMP smooth muscle cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011351 parvab-001 protein_coding Danio_rerio 0 843
ENSDART00000056847 parvab-201 protein_coding Danio_rerio 0 843
ENSDART00000104069 parvaa-201 protein_coding Danio_rerio 0 745
ENSDART00000064187 parvaa-001 protein_coding Danio_rerio 0 745
ENST00000334956 PARVA-001 protein_coding Homo_sapiens 0 1515
ENST00000528916 PARVA-004 protein_coding Homo_sapiens 0 760
ENST00000533345 PARVA-003 retained_intron Homo_sapiens 0 774

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