C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acyl-Coenzyme A dehydrogenase, short/branched chain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030861 Acadsb 10090 + 7:131410601-131446211 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015829 Acadsb-001 131410601-131446211 protein_coding
  ENSMUST00000117518 Acadsb-003 131410703-131444763 protein_coding
  ENSMUST00000133277 Acadsb-005 131424472-131428790 retained_intron
  ENSMUST00000135633 Acadsb-004 131424437-131429990 retained_intron
  ENSMUST00000136612 Acadsb-007 131434246-131437519 retained_intron
  ENSMUST00000151995 Acadsb-006 131428584-131432142 retained_intron
  ENSMUST00000156261 Acadsb-002 131429811-131446209 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015829ENSMUST00000117518ENSMUST00000135633ENSMUST00000136612ENSMUST00000156261
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015829 28.501±2.43 54.442±20.71 14.571±0.74 6.547±3.72 14.566±2.61 6.429±0.97 21.491±1.56 24.987±4.63 14.574±8.23 14.928±3.76 20.930±2.17 16.927±8.09 5.809±2.79 4.665±1.01
ENSMUST00000117518 N/A N/A N/A 2.686±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.395±0.00 0.493±0.00
ENSMUST00000135633 N/A N/A N/A 18.426±0.00 N/A N/A N/A N/A N/A N/A N/A 64.455±0.00 17.825±5.69 11.601±0.00
ENSMUST00000136612 N/A N/A N/A 101.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156261 N/A 22.278±4.91 N/A 3.536±0.00 9.079±3.32 N/A N/A 15.407±0.00 8.635±5.48 6.396±0.93 N/A 12.112±0.00 2.702±0.19 1.251±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0008DB CIL_0008DB_0002 VISTA 7:131163946-131765852
CIL_0009A3 CIL_0009A3_0002 VISTA 7:131196657-131797909
CIL_0007QE CIL_0007QE_0002 VISTA 7:131249727-131851322
CIL_00011Q CIL_00011Q_0002 CGP 7:131388652-131446211
CIL_00011R CIL_00011R_0002 CGP 7:131410601-131544925

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003995 IEA acyl-CoA dehydrogenase activity
GO:0005739 IDA mitochondrion
GO:0006631 IEA fatty acid metabolic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076780 acadsb acyl-CoA dehydrogenase, short/branched chain protein_coding Danio_rerio
ENSG00000196177 ACADSB acyl-CoA dehydrogenase, short/branched chain protein_coding Homo_sapiens

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