C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-Coenzyme A dehydrogenase, short/branched chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015829 Acadsb-001 ENSMUSG00000030861 10090 + 7:131410601-131446211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015829 28.501±2.43 54.442±20.71 14.571±0.74 6.547±3.72 14.566±2.61 6.429±0.97 21.491±1.56 24.987±4.63 14.574±8.23 14.928±3.76 20.930±2.17 16.927±8.09 5.809±2.79 4.665±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0008DB CIL_0008DB_0002 VISTA 7:131163946-131765852
CIL_0009A3 CIL_0009A3_0002 VISTA 7:131196657-131797909
CIL_0007QE CIL_0007QE_0002 VISTA 7:131249727-131851322
CIL_00011Q CIL_00011Q_0002 CGP 7:131388652-131446211
CIL_00011R CIL_00011R_0002 CGP 7:131410601-131544925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003995 IEA acyl-CoA dehydrogenase activity
GO:0005739 IDA mitochondrion
GO:0006631 IEA fatty acid metabolic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358776 ACADSB-001 protein_coding Homo_sapiens 0 1153
ENST00000368869 ACADSB-004 protein_coding Homo_sapiens 0 976
ENST00000541070 ACADSB-005 retained_intron Homo_sapiens 0 209

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