C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00011R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196177-ENSG00000188620 CGP 9606 10:123008979-123137741
GeneTranscriptPositionBiotype
ENSG00000188620 (HMX3)
H6 family homeobox 3 		ENST00000357878 (HMX3-001) 123135962-123137741 protein_coding
ENSG00000196177 (ACADSB)
acyl-CoA dehydrogenase, short/branched chain 		ENST00000358776 (ACADSB-001) 123009016-123058311 protein_coding
ENST00000368869 (ACADSB-004) 123008979-123054119 protein_coding
ENST00000411816 (ACADSB-002) 123027534-123040657 protein_coding
ENST00000496730 (ACADSB-003) 123034355-123047249 processed_transcript
ENST00000541070 (ACADSB-005) 123052761-123053878 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_00011R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030861-ENSMUSG00000040148 CGP 10090 7:131410601-131544925
GeneTranscriptPositionBiotype
ENSMUSG00000030861 (Acadsb)
acyl-Coenzyme A dehydrogenase, short/branched chain 		ENSMUST00000015829 (Acadsb-001) 131410601-131446211 protein_coding
ENSMUST00000117518 (Acadsb-003) 131410703-131444763 protein_coding
ENSMUST00000133277 (Acadsb-005) 131424472-131428790 retained_intron
ENSMUST00000135633 (Acadsb-004) 131424437-131429990 retained_intron
ENSMUST00000136612 (Acadsb-007) 131434246-131437519 retained_intron
ENSMUST00000151995 (Acadsb-006) 131428584-131432142 retained_intron
ENSMUST00000156261 (Acadsb-002) 131429811-131446209 retained_intron
ENSMUSG00000040148 (Hmx3)
H6 homeobox 3 		ENSMUST00000046093 (Hmx3-001) 131542867-131544925 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00011R_0001ENSG00000188620ENST00000357878ENSG00000196177ENST00000358776ENST00000368869ENST00000411816ENST00000496730ENST00000541070CIL_00011R_0002ENSMUSG00000030861ENSMUST00000015829ENSMUST00000117518ENSMUST00000133277ENSMUST00000135633ENSMUST00000136612ENSMUST00000151995ENSMUST00000156261ENSMUSG00000040148ENSMUST00000046093
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00011R_0001ENSG00000188620ENST00000357878ENSG00000196177ENST00000358776ENST00000368869CIL_00011R_0002ENSMUSG00000030861ENSMUST00000015829ENSMUST00000117518ENSMUST00000135633ENSMUST00000136612ENSMUST00000156261ENSMUSG00000040148ENSMUST00000046093
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000188620 ENST00000357878 0.136±0.00 N/A N/A N/A N/A 0.112±0.00 0.053±0.00 0.319±0.00 N/A 0.060±0.00 0.277±0.00 N/A N/A 0.096±0.00
ENSG00000196177 ENST00000358776 1.835±0.00 1.446±0.00 8.815±0.00 3.127±1.57 2.836±1.34 1.778±0.27 6.652±5.43 32.649±27.44 21.512±19.67 0.463±0.04 2.045±0.07 1.246±0.72 0.854±0.06 1.490±0.76
ENST00000368869 N/A N/A N/A N/A N/A 1.453±0.00 N/A N/A 2.008±0.00 1.112±0.00 2.868±0.00 3.584±0.00 1.825±0.00 3.779±0.00
ENST00000411816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030861 ENSMUST00000015829 28.501±2.43 54.442±20.71 14.571±0.74 6.547±3.72 14.566±2.61 6.429±0.97 21.491±1.56 24.987±4.63 14.574±8.23 14.928±3.76 20.930±2.17 16.927±8.09 5.809±2.79 4.665±1.01
ENSMUST00000117518 N/A N/A N/A 2.686±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.395±0.00 0.493±0.00
ENSMUST00000133277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135633 N/A N/A N/A 18.426±0.00 N/A N/A N/A N/A N/A N/A N/A 64.455±0.00 17.825±5.69 11.601±0.00
ENSMUST00000136612 N/A N/A N/A 101.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156261 N/A 22.278±4.91 N/A 3.536±0.00 9.079±3.32 N/A N/A 15.407±0.00 8.635±5.48 6.396±0.93 N/A 12.112±0.00 2.702±0.19 1.251±0.46
ENSMUSG00000040148 ENSMUST00000046093 N/A N/A N/A 0.506±0.34 N/A 0.902±0.32 0.021±0.00 0.150±0.05 0.012±0.01 0.016±0.00 N/A N/A 0.046±0.05 0.027±0.01

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