C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-Coenzyme A dehydrogenase, short/branched chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156261 Acadsb-002 ENSMUSG00000030861 10090 + 7:131429811-131446209 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000156261
Transcript ID Adrenal Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000156261 22.278±4.91 3.536±0.00 9.079±3.32 15.407±0.00 8.635±5.48 6.396±0.93 12.112±0.00 2.702±0.19 1.251±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0008DB CIL_0008DB_0002 VISTA 7:131163946-131765852
CIL_0009A3 CIL_0009A3_0002 VISTA 7:131196657-131797909
CIL_0007QE CIL_0007QE_0002 VISTA 7:131249727-131851322
CIL_00011Q CIL_00011Q_0002 CGP 7:131388652-131446211
CIL_00011R CIL_00011R_0002 CGP 7:131410601-131544925

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358776 ACADSB-001 protein_coding Homo_sapiens 0 798
ENST00000368869 ACADSB-004 protein_coding Homo_sapiens 0 798
ENST00000541070 ACADSB-005 retained_intron Homo_sapiens 0 209

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