C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin family domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033158 Ubfd1-001 ENSMUSG00000030870 10090 + 7:122067175-122082194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033158
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033158 10.983±2.33 23.269±4.20 12.653±1.74 23.944±13.14 13.905±5.67 11.080±3.76 8.876±0.66 12.247±0.84 12.078±2.75 13.641±4.58 4.475±0.40 27.752±11.84 25.814±11.26 5.801±2.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D4 CIL_0006D4_0002 CGP 7:121986722-122067263
CIL_0006D3 CIL_0006D3_0002 CGP 7:122037213-122082194
CIL_0006D2 CIL_0006D2_0002 CGP 7:122067175-122101886

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000395878 UBFD1-001 protein_coding Homo_sapiens 0 1938
ENST00000563366 UBFD1-006 processed_transcript Homo_sapiens 0 953
ENST00000564106 UBFD1-008 processed_transcript Homo_sapiens 0 497
ENST00000564501 EARS2-017 protein_coding Homo_sapiens 0 239
ENST00000565634 UBFD1-007 retained_intron Homo_sapiens 0 545
ENST00000566136 UBFD1-003 retained_intron Homo_sapiens 0 717
ENST00000566669 UBFD1-004 retained_intron Homo_sapiens 0 453
ENST00000567212 UBFD1-002 protein_coding Homo_sapiens 0 1642
ENST00000567264 UBFD1-005 protein_coding Homo_sapiens 0 732
ENST00000569919 UBFD1-009 retained_intron Homo_sapiens 0 278
ENST00000571064 UBFD1-010 processed_transcript Homo_sapiens 0 946
ENST00000603335 RP11-1E1.2-001 processed_pseudogene Homo_sapiens 0 998

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