C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal RNA processing 8, methyltransferase, homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030888 Rrp8 10090 - 7:105732207-105737376 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033179 Rrp8-001 105732207-105736781 protein_coding
  ENSMUST00000098148 Rrp8-002 105732404-105737376 protein_coding
  ENSMUST00000127738 Rrp8-004 105733006-105734063 processed_transcript
  ENSMUST00000137902 Rrp8-003 105734692-105736373 processed_transcript
  ENSMUST00000148176 Rrp8-006 105732640-105733681 retained_intron
  ENSMUST00000154852 Rrp8-005 105733006-105733946 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaENSMUST00000033179
Transcript ID Brain Liver Muscle Ovary Placenta
ENSMUST00000033179 5.872±0.00 9.407±0.00 5.667±0.59 14.942±0.00 15.833±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I3 CIL_0001I3_0002 CGP 7:105640562-105737376
CIL_0001HZ CIL_0001HZ_0002 CGP 7:105732207-105742925

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000183 ISS chromatin silencing at rDNA
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005677 ISS chromatin silencing complex
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0008168 IEA methyltransferase activity
GO:0016568 IEA chromatin modification
GO:0032259 IEA methylation
GO:0033553 ISS rDNA heterochromatin
GO:0035064 ISS methylated histone binding
GO:0042149 IEA cellular response to glucose starvation
GO:0044822 IEA poly(A) RNA binding
GO:0046015 IEA regulation of transcription by glucose
GO:0071158 IEA positive regulation of cell cycle arrest
GO:0072332 IEA intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071652 RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast) protein_coding Danio_rerio
ENSG00000132275 RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast) protein_coding Homo_sapiens

Loading