C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA processing 8, methyltransferase, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033179 Rrp8-001 ENSMUSG00000030888 10090 - 7:105732207-105736781 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaENSMUST00000033179
Transcript ID Brain Liver Muscle Ovary Placenta
ENSMUST00000033179 5.872±0.00 9.407±0.00 5.667±0.59 14.942±0.00 15.833±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I3 CIL_0001I3_0002 CGP 7:105640562-105737376
CIL_0001HZ CIL_0001HZ_0002 CGP 7:105732207-105742925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000183 ISS chromatin silencing at rDNA
GO:0005677 ISS chromatin silencing complex
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0008168 IEA methyltransferase activity
GO:0016568 IEA chromatin modification
GO:0032259 IEA methylation
GO:0033553 ISS rDNA heterochromatin
GO:0035064 ISS methylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254605 RRP8-001 protein_coding Homo_sapiens 0 1184
ENST00000526352 RRP8-004 retained_intron Homo_sapiens 0 420
ENST00000530762 RRP8-006 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000533907 RRP8-002 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000534343 RRP8-003 protein_coding Homo_sapiens 0 435

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