C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA processing 8, methyltransferase, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098148 Rrp8-002 ENSMUSG00000030888 10090 - 7:105732404-105737376 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I3 CIL_0001I3_0002 CGP 7:105640562-105737376
CIL_0001HZ CIL_0001HZ_0002 CGP 7:105732207-105742925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000183 IEA chromatin silencing at rDNA
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005677 IEA chromatin silencing complex
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0033553 IEA rDNA heterochromatin
GO:0035064 IEA methylated histone binding
GO:0042149 IEA cellular response to glucose starvation
GO:0044822 IEA poly(A) RNA binding
GO:0046015 IEA regulation of transcription by glucose
GO:0071158 IEA positive regulation of cell cycle arrest
GO:0072332 IEA intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254605 RRP8-001 protein_coding Homo_sapiens 0 1175
ENST00000299421 ILK-001 protein_coding Homo_sapiens 6.99949e-42 176
ENST00000396751 ILK-003 protein_coding Homo_sapiens 8.00001e-42 176
ENST00000420936 ILK-002 protein_coding Homo_sapiens 6.00036e-42 176
ENST00000526114 ILK-009 nonsense_mediated_decay Homo_sapiens 9.99967e-42 174
ENST00000526352 RRP8-004 retained_intron Homo_sapiens 0 420
ENST00000526711 ILK-006 nonsense_mediated_decay Homo_sapiens 1.99993e-41 174
ENST00000527121 ILK-008 nonsense_mediated_decay Homo_sapiens 9.99967e-42 174
ENST00000528995 ILK-005 protein_coding Homo_sapiens 6.00036e-42 176
ENST00000530016 ILK-007 retained_intron Homo_sapiens 6.00036e-42 176
ENST00000530762 RRP8-006 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000532063 ILK-201 protein_coding Homo_sapiens 1.99993e-41 174
ENST00000533907 RRP8-002 nonsense_mediated_decay Homo_sapiens 0 580
ENST00000534343 RRP8-003 protein_coding Homo_sapiens 0 435
ENST00000534565 ILK-010 processed_transcript Homo_sapiens 0 231
ENST00000537806 ILK-004 protein_coding Homo_sapiens 6.99949e-42 176

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