C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, alpha 1F subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155090 Cacna1f-003 ENSMUSG00000031142 10090 + X:7607083-7635193 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000155090
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000155090 0.012±0.01 0.015±0.02 0.074±0.00 0.007±0.00 0.004±0.00 0.005±0.01 0.011±0.01 0.025±0.02 0.002±0.00 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V1 CIL_0003V1_0002 CGP X:7607083-7653256

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IMP voltage-gated calcium channel activity
GO:0005886 IBA plasma membrane
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006874 IMP cellular calcium ion homeostasis
GO:0007409 IMP axonogenesis
GO:0007601 IMP visual perception
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0034765 IEA regulation of ion transmembrane transport
GO:0048813 IMP dendrite morphogenesis
GO:0060041 IMP retina development in camera-type eye
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011078 CACNA1F (1 of 2)-201 protein_coding Danio_rerio 0 715
ENSDART00000105895 cacna1sa-001 protein_coding Danio_rerio 0 329
ENST00000288139 CACNA1D-001 protein_coding Homo_sapiens 0 713
ENST00000323022 CACNA1F-001 protein_coding Homo_sapiens 0 6940
ENST00000327702 CACNA1C-023 protein_coding Homo_sapiens 0 1136
ENST00000335762 CACNA1C-015 protein_coding Homo_sapiens 0 1164
ENST00000344100 CACNA1C-021 protein_coding Homo_sapiens 0 680
ENST00000347598 CACNA1C-017 protein_coding Homo_sapiens 0 597
ENST00000350061 CACNA1D-003 protein_coding Homo_sapiens 0 713
ENST00000362061 CACNA1S-001 protein_coding Homo_sapiens 0 440
ENST00000367338 CACNA1S-002 protein_coding Homo_sapiens 0 887
ENST00000376251 CACNA1F-002 protein_coding Homo_sapiens 0 5483
ENST00000376265 CACNA1F-007 protein_coding Homo_sapiens 0 5483
ENST00000399591 CACNA1C-008 protein_coding Homo_sapiens 0 1031
ENST00000399595 CACNA1C-002 protein_coding Homo_sapiens 0 1059
ENST00000399597 CACNA1C-005 protein_coding Homo_sapiens 0 1147
ENST00000399601 CACNA1C-020 protein_coding Homo_sapiens 0 1136
ENST00000399603 CACNA1C-011 protein_coding Homo_sapiens 0 1147
ENST00000399606 CACNA1C-019 protein_coding Homo_sapiens 0 1092
ENST00000399617 CACNA1C-013 protein_coding Homo_sapiens 0 1147
ENST00000399621 CACNA1C-006 protein_coding Homo_sapiens 0 1066
ENST00000399629 CACNA1C-022 protein_coding Homo_sapiens 0 641
ENST00000399634 CACNA1C-012 protein_coding Homo_sapiens 0 1164
ENST00000399637 CACNA1C-007 protein_coding Homo_sapiens 0 1038
ENST00000399638 CACNA1C-004 protein_coding Homo_sapiens 0 669
ENST00000399641 CACNA1C-010 protein_coding Homo_sapiens 0 1136
ENST00000399644 CACNA1C-003 protein_coding Homo_sapiens 0 1120
ENST00000399649 CACNA1C-024 protein_coding Homo_sapiens 0 1037
ENST00000399655 CACNA1C-001 protein_coding Homo_sapiens 0 1164
ENST00000402845 CACNA1C-032 protein_coding Homo_sapiens 0 1050
ENST00000406454 CACNA1C-031 protein_coding Homo_sapiens 0 1147
ENST00000422281 CACNA1D-002 protein_coding Homo_sapiens 0 1131
ENST00000480889 CACNA1F-006 processed_transcript Homo_sapiens 0 573
ENST00000480911 CACNA1C-018 protein_coding Homo_sapiens 0 627
ENST00000481035 CACNA1F-004 retained_intron Homo_sapiens 0 529
ENST00000481478 CACNA1D-004 protein_coding Homo_sapiens 0 721
ENST00000486943 CACNA1F-005 protein_coding Homo_sapiens 9e-37 158
ENST00000496818 CACNA1C-026 protein_coding Homo_sapiens 0 244
ENST00000613940 CACNA1C-201 protein_coding Homo_sapiens 0 1147
ENST00000615303 CACNA1C-202 protein_coding Homo_sapiens 0 597
ENST00000615400 CACNA1C-203 protein_coding Homo_sapiens 0 597
ENST00000620878 CACNA1C-204 protein_coding Homo_sapiens 0 1155
ENST00000621625 CACNA1C-205 protein_coding Homo_sapiens 0 1136

Loading