C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinitis pigmentosa GTPase regulator
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031174 Rpgr 10090 - X:10073621-10216920 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044598 Rpgr-001 10158216-10216920 protein_coding
  ENSMUST00000072393 Rpgr-006 10073621-10216920 protein_coding
  ENSMUST00000073392 Rpgr-003 10158216-10216920 protein_coding
  ENSMUST00000115532 Rpgr-002 10160608-10216920 protein_coding
  ENSMUST00000115533 Rpgr-005 10158372-10216920 protein_coding
  ENSMUST00000115534 Rpgr-004 10158216-10216453 protein_coding
  ENSMUST00000124744 Rpgr-008 10207001-10216733 retained_intron
  ENSMUST00000143532 Rpgr-009 10213548-10216482 processed_transcript
  ENSMUST00000155734 Rpgr-007 10180968-10216758 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044598ENSMUST00000072393ENSMUST00000073392ENSMUST00000115532ENSMUST00000115533ENSMUST00000115534ENSMUST00000143532ENSMUST00000155734
Transcript ID Adrenal Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044598 N/A N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A
ENSMUST00000072393 N/A 6.156±0.00 N/A N/A N/A N/A N/A 5.588±3.92 5.600±1.31 N/A
ENSMUST00000073392 N/A 5.896±0.00 N/A 0.674±0.04 0.378±0.01 1.787±0.10 0.253±0.02 N/A 1.339±0.30 3.649±0.44
ENSMUST00000115532 N/A N/A N/A N/A N/A N/A N/A 2.499±0.00 N/A 15.713±27.12
ENSMUST00000115533 N/A N/A 0.625±0.07 N/A 0.274±0.16 N/A 0.300±0.09 2.001±0.45 0.646±0.06 1.888±0.00
ENSMUST00000115534 N/A 2.640±0.00 N/A 0.806±0.00 0.269±0.11 N/A 0.253±0.05 2.377±0.00 0.279±0.00 N/A
ENSMUST00000143532 N/A N/A N/A N/A 0.314±0.07 N/A N/A N/A N/A N/A
ENSMUST00000155734 1.201±0.10 N/A N/A N/A 0.279±0.27 N/A N/A 1.312±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Z7 CIL_0005Z7_0002 CGP X:9885622-10117709
CIL_0005YZ CIL_0005YZ_0002 CGP X:10037977-10216920
CIL_0005YY CIL_0005YY_0002 CGP X:10073621-10321024

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IEA photoreceptor outer segment
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005813 ISS centrosome
GO:0005929 IDA cilium
GO:0007601 ISS visual perception
GO:0036064 IDA ciliary basal body
GO:0036126 IDA sperm flagellum
GO:0042073 IMP intraciliary transport
GO:0042384 IEA cilium assembly
GO:0042462 IMP eye photoreceptor cell development
GO:0043547 IEA positive regulation of GTPase activity
GO:0044822 IEA poly(A) RNA binding
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056617 rpgra retinitis pigmentosa GTPase regulator a protein_coding Danio_rerio
ENSDARG00000057074 rpgrb retinitis pigmentosa GTPase regulator b protein_coding Danio_rerio
ENSG00000156313 RPGR retinitis pigmentosa GTPase regulator protein_coding Homo_sapiens

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