C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005YY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156313-ENSG00000036473 CGP 9606 X:38269163-38421450
GeneTranscriptPositionBiotype
ENSG00000036473 (OTC)
ornithine carbamoyltransferase 		ENST00000039007 (OTC-001) 38352545-38421450 protein_coding
ENST00000488812 (OTC-002) 38352605-38403667 processed_transcript
ENSG00000156313 (RPGR)
retinitis pigmentosa GTPase regulator 		ENST00000318842 (RPGR-001) 38269163-38327564 protein_coding
ENST00000339363 (RPGR-201) 38269171-38327535 protein_coding
ENST00000378505 (RPGR-009) 38284409-38327544 protein_coding
ENST00000464437 (RPGR-006) 38298331-38301371 protein_coding
ENST00000470183 (RPGR-005) 38317246-38318990 retained_intron
ENST00000474584 (RPGR-007) 38269520-38327506 nonsense_mediated_decay
ENST00000476559 (RPGR-003) 38269343-38273942 retained_intron
ENST00000482855 (RPGR-002) 38269349-38327422 nonsense_mediated_decay
ENST00000494707 (RPGR-004) 38273435-38291465 protein_coding
ENST00000494841 (RPGR-008) 38297308-38304831 retained_intron
ENSG00000252050 (SNORA31)
Small nucleolar RNA SNORA31 		ENST00000516241 (SNORA31.1-206) 38308112-38308241 snoRNA
CIL_0005YY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031174-ENSMUSG00000031173 CGP 10090 X:10073621-10321024
GeneTranscriptPositionBiotype
ENSMUSG00000031173 (Otc)
ornithine transcarbamylase 		ENSMUST00000049910 (Otc-001) 10252305-10321024 protein_coding
ENSMUST00000115528 (Otc-002) 10252367-10316864 protein_coding
ENSMUSG00000031174 (Rpgr)
retinitis pigmentosa GTPase regulator 		ENSMUST00000044598 (Rpgr-001) 10158216-10216920 protein_coding
ENSMUST00000072393 (Rpgr-006) 10073621-10216920 protein_coding
ENSMUST00000073392 (Rpgr-003) 10158216-10216920 protein_coding
ENSMUST00000115532 (Rpgr-002) 10160608-10216920 protein_coding
ENSMUST00000115533 (Rpgr-005) 10158372-10216920 protein_coding
ENSMUST00000115534 (Rpgr-004) 10158216-10216453 protein_coding
ENSMUST00000124744 (Rpgr-008) 10207001-10216733 retained_intron
ENSMUST00000143532 (Rpgr-009) 10213548-10216482 processed_transcript
ENSMUST00000155734 (Rpgr-007) 10180968-10216758 retained_intron
ENSMUSG00000090084 (Srpx)
sushi-repeat-containing protein 		ENSMUST00000044789 (Srpx-001) 10037977-10117682 protein_coding
ENSMUST00000115543 (Srpx-003) 10038907-10117605 protein_coding
ENSMUST00000115544 (Srpx-002) 10038556-10117709 protein_coding
ENSMUST00000147334 (Srpx-004) 10073621-10117676 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YY_0001ENSG00000036473ENST00000039007ENST00000488812ENSG00000156313ENST00000318842ENST00000339363ENST00000378505ENST00000464437ENST00000470183ENST00000474584ENST00000476559ENST00000482855ENST00000494707ENST00000494841ENSG00000252050ENST00000516241CIL_0005YY_0002ENSMUSG00000031173ENSMUST00000049910ENSMUST00000115528ENSMUSG00000031174ENSMUST00000044598ENSMUST00000072393ENSMUST00000073392ENSMUST00000115532ENSMUST00000115533ENSMUST00000115534ENSMUST00000124744ENSMUST00000143532ENSMUST00000155734ENSMUSG00000090084ENSMUST00000044789ENSMUST00000115543ENSMUST00000115544ENSMUST00000147334
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YY_0001ENSG00000036473ENST00000039007ENST00000488812ENSG00000156313ENST00000318842ENST00000339363ENST00000378505ENST00000470183ENST00000474584ENST00000476559ENST00000482855ENST00000494707ENSG00000252050ENST00000516241CIL_0005YY_0002ENSMUSG00000031173ENSMUST00000049910ENSMUST00000115528ENSMUSG00000031174ENSMUST00000044598ENSMUST00000072393ENSMUST00000073392ENSMUST00000115532ENSMUST00000115533ENSMUST00000115534ENSMUST00000143532ENSMUST00000155734ENSMUSG00000090084ENSMUST00000044789ENSMUST00000115543ENSMUST00000115544ENSMUST00000147334
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000036473 ENST00000039007 0.175±0.00 2.133±0.00 N/A N/A 0.022±0.00 0.555±0.04 0.042±0.00 11.558±11.54 1.583±1.53 0.039±0.00 N/A 0.090±0.00 0.032±0.02 0.213±0.00
ENST00000488812 N/A N/A N/A N/A 0.147±0.00 0.212±0.00 N/A 43.514±0.00 N/A 0.216±0.00 0.086±0.00 N/A N/A 0.175±0.00
ENSG00000156313 ENST00000318842 4.486±0.00 2.220±0.00 N/A N/A 0.602±0.00 N/A 0.156±0.00 0.504±0.00 0.269±0.01 0.759±0.00 0.646±0.00 1.296±0.50 0.544±0.31 6.279±3.51
ENST00000339363 1.934±0.00 N/A N/A 1.273±0.00 0.679±0.00 0.725±0.00 0.543±0.00 0.480±0.00 N/A 0.577±0.00 N/A 1.585±0.00 0.394±0.15 N/A
ENST00000378505 N/A N/A 0.084±0.00 0.595±0.00 N/A 0.335±0.17 N/A 0.531±0.00 0.169±0.00 0.405±0.00 N/A N/A N/A N/A
ENST00000464437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470183 N/A N/A 2.128±0.00 6.452±0.00 N/A 11.285±0.00 N/A 2.310±0.00 N/A N/A N/A N/A N/A N/A
ENST00000474584 N/A N/A N/A 0.977±0.00 N/A 1.391±0.00 0.685±0.00 1.145±0.00 0.426±0.00 N/A 0.762±0.00 N/A 0.286±0.00 N/A
ENST00000476559 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.134±0.00 N/A 1.184±0.00 N/A N/A
ENST00000482855 4.534±0.00 2.446±0.00 N/A 0.291±0.00 0.874±0.00 0.756±0.00 1.181±0.00 N/A 0.151±0.00 3.133±0.00 N/A 0.509±0.00 0.380±0.16 1.464±0.00
ENST00000494707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.238±0.00 1.818±0.00 5.802±0.00
ENST00000494841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252050 ENST00000516241 N/A 0.121±0.00 N/A N/A 22.116±0.00 13.554±0.00 N/A N/A N/A N/A N/A 24.774±24.37 N/A 0.532±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031173 ENSMUST00000049910 N/A N/A 0.005±0.00 0.008±0.00 0.334±0.18 2.077±0.41 0.025±0.01 N/A 59.011±61.56 0.146±0.08 0.030±0.01 0.098±0.05 0.530±0.62 N/A
ENSMUST00000115528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.03 0.048±0.00 N/A
ENSMUSG00000031174 ENSMUST00000044598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A
ENSMUST00000072393 N/A N/A N/A 6.156±0.00 N/A N/A N/A N/A N/A N/A N/A 5.588±3.92 5.600±1.31 N/A
ENSMUST00000073392 N/A N/A N/A 5.896±0.00 N/A N/A N/A 0.674±0.04 0.378±0.01 1.787±0.10 0.253±0.02 N/A 1.339±0.30 3.649±0.44
ENSMUST00000115532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.499±0.00 N/A 15.713±27.12
ENSMUST00000115533 N/A N/A N/A N/A N/A N/A 0.625±0.07 N/A 0.274±0.16 N/A 0.300±0.09 2.001±0.45 0.646±0.06 1.888±0.00
ENSMUST00000115534 N/A N/A N/A 2.640±0.00 N/A N/A N/A 0.806±0.00 0.269±0.11 N/A 0.253±0.05 2.377±0.00 0.279±0.00 N/A
ENSMUST00000124744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143532 N/A N/A N/A N/A N/A N/A N/A N/A 0.314±0.07 N/A N/A N/A N/A N/A
ENSMUST00000155734 N/A 1.201±0.10 N/A N/A N/A N/A N/A N/A 0.279±0.27 N/A N/A 1.312±0.00 N/A N/A
ENSMUSG00000090084 ENSMUST00000044789 5.979±2.70 1.049±0.05 4.178±0.83 N/A 16.833±3.50 2.828±0.67 0.666±0.20 1.526±0.32 0.092±0.01 5.737±0.43 0.234±0.03 3.966±1.19 2.408±0.00 N/A
ENSMUST00000115543 3.152±0.00 N/A N/A N/A N/A N/A N/A N/A 0.109±0.02 N/A 0.597±0.00 N/A N/A N/A
ENSMUST00000115544 6.303±2.36 1.719±0.41 17.735±0.37 N/A 29.026±12.62 3.384±1.12 1.854±0.16 1.858±0.25 0.557±0.39 3.014±0.58 0.821±0.28 3.754±0.76 3.219±3.28 N/A
ENSMUST00000147334 N/A 9.080±1.86 N/A N/A 40.838±8.61 7.396±1.70 N/A N/A 0.409±0.19 8.790±0.90 N/A 7.110±1.53 N/A N/A

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