C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: retinitis pigmentosa GTPase regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155734 Rpgr-007 ENSMUSG00000031174 10090 - X:10180968-10216758 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLiverOvaryENSMUST00000155734
Transcript ID Adrenal Liver Ovary
ENSMUST00000155734 1.201±0.10 0.279±0.27 1.312±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Z7 CIL_0005Z7_0002 CGP X:9885622-10117709
CIL_0005YZ CIL_0005YZ_0002 CGP X:10037977-10216920
CIL_0005YY CIL_0005YY_0002 CGP X:10073621-10321024

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318842 RPGR-001 protein_coding Homo_sapiens 0 1024
ENST00000339363 RPGR-201 protein_coding Homo_sapiens 0 1024
ENST00000378505 RPGR-009 protein_coding Homo_sapiens 0 1024
ENST00000470183 RPGR-005 retained_intron Homo_sapiens 0 279
ENST00000474584 RPGR-007 nonsense_mediated_decay Homo_sapiens 0 1024
ENST00000482855 RPGR-002 nonsense_mediated_decay Homo_sapiens 0 1024

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