C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinitis pigmentosa GTPase regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115534 Rpgr-004 ENSMUSG00000031174 10090 - X:10158216-10216453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleOvaryPlacentaENSMUST00000115534
Transcript ID Brain Kidney Liver Muscle Ovary Placenta
ENSMUST00000115534 2.640±0.00 0.806±0.00 0.269±0.11 0.253±0.05 2.377±0.00 0.279±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Z7 CIL_0005Z7_0002 CGP X:9885622-10117709
CIL_0005YZ CIL_0005YZ_0002 CGP X:10037977-10216920
CIL_0005YY CIL_0005YY_0002 CGP X:10073621-10321024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005929 IDA cilium
GO:0007601 IMP visual perception
GO:0042462 IMP eye photoreceptor cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318842 RPGR-001 protein_coding Homo_sapiens 0 1031
ENST00000339363 RPGR-201 protein_coding Homo_sapiens 0 1031
ENST00000378505 RPGR-009 protein_coding Homo_sapiens 0 1031
ENST00000470183 RPGR-005 retained_intron Homo_sapiens 0 279
ENST00000474584 RPGR-007 nonsense_mediated_decay Homo_sapiens 0 1013
ENST00000482855 RPGR-002 nonsense_mediated_decay Homo_sapiens 0 1031

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