C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: von Hippel-Lindau binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031197 Vbp1 10090 + X:75514299-75534942 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033540 Vbp1-001 75514299-75534942 protein_coding
  ENSMUST00000114070 Vbp1-002 75514299-75524046 protein_coding
  ENSMUST00000123419 Vbp1-003 75514317-75521755 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033540ENSMUST00000114070ENSMUST00000123419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033540 3.056±0.62 1.291±0.73 15.132±2.36 28.457±12.73 2.882±0.47 2.072±0.79 5.412±0.38 4.417±1.31 11.958±11.34 5.502±1.47 14.902±0.87 4.780±5.88 11.464±6.65 1.284±0.35
ENSMUST00000114070 1.021±0.00 0.919±0.41 N/A N/A N/A N/A N/A N/A 0.726±0.00 N/A N/A 1.874±1.54 8.316±3.10 1.741±0.00
ENSMUST00000123419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.907±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LJ CIL_0003LJ_0002 CGP X:75416628-75534942
CIL_0003LK CIL_0003LK_0002 CGP X:75514299-75578231

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0006457 IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030241 vbp1 von Hippel-Lindau binding protein 1 protein_coding Danio_rerio
ENSG00000155959 VBP1 von Hippel-Lindau binding protein 1 protein_coding Homo_sapiens

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