C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003LJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185515-ENSG00000155959 CGP 9606 X:155071420-155239817
GeneTranscriptPositionBiotype
ENSG00000155959 (VBP1)
von Hippel-Lindau binding protein 1 		ENST00000286428 (VBP1-001) 155216366-155239817 protein_coding
ENST00000460509 (VBP1-003) 155227144-155238961 retained_intron
ENST00000535916 (VBP1-002) 155197007-155239044 protein_coding
ENSG00000185515 (BRCC3)
BRCA1/BRCA2-containing complex, subunit 3 		ENST00000330045 (BRCC3-002) 155071431-155122727 protein_coding
ENST00000340647 (BRCC3-006) 155071420-155121318 protein_coding
ENST00000369459 (BRCC3-004) 155071499-155123072 protein_coding
ENST00000369462 (BRCC3-001) 155071503-155123074 protein_coding
ENST00000399026 (BRCC3-003) 155073411-155078930 protein_coding
ENST00000399042 (BRCC3-201) 155071528-155120150 protein_coding
ENST00000411985 (BRCC3-007) 155071518-155116183 protein_coding
ENST00000453705 (BRCC3-005) 155071532-155123036 nonsense_mediated_decay
ENST00000620502 (BRCC3-202) 155071528-155120150 protein_coding
CIL_0003LJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031201-ENSMUSG00000031197 CGP 10090 X:75416628-75534942
GeneTranscriptPositionBiotype
ENSMUSG00000031197 (Vbp1)
von Hippel-Lindau binding protein 1 		ENSMUST00000033540 (Vbp1-001) 75514299-75534942 protein_coding
ENSMUST00000114070 (Vbp1-002) 75514299-75524046 protein_coding
ENSMUST00000123419 (Vbp1-003) 75514317-75521755 retained_intron
ENSMUSG00000031201 (Brcc3)
BRCA1/BRCA2-containing complex, subunit 3 		ENSMUST00000033544 (Brcc3-001) 75416628-75454001 protein_coding
ENSMUST00000114074 (Brcc3-004) 75416710-75451708 protein_coding
ENSMUST00000118428 (Brcc3-008) 75416697-75451985 protein_coding
ENSMUST00000124321 (Brcc3-005) 75433978-75451224 retained_intron
ENSMUST00000133781 (Brcc3-007) 75416716-75437991 protein_coding
ENSMUST00000151938 (Brcc3-003) 75416700-75450732 retained_intron
ENSMUST00000152228 (Brcc3-006) 75417307-75435475 protein_coding
ENSMUSG00000048709 (Gm8666)
predicted gene 8666 		ENSMUST00000117517 (Gm8666-001) 75475232-75475523 processed_pseudogene
ENSMUSG00000082208 (Gm15379)
predicted gene 15379 		ENSMUST00000121224 (Gm15379-001) 75458812-75459459 processed_pseudogene
ENSMUSG00000083093 (Gm15385)
predicted gene 15385 		ENSMUST00000118725 (Gm15385-001) 75459963-75485753 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LJ_0001ENSG00000155959ENST00000286428ENST00000460509ENST00000535916ENSG00000185515ENST00000330045ENST00000340647ENST00000369459ENST00000369462ENST00000399026ENST00000399042ENST00000411985ENST00000453705ENST00000620502CIL_0003LJ_0002ENSMUSG00000031197ENSMUST00000033540ENSMUST00000114070ENSMUST00000123419ENSMUSG00000031201ENSMUST00000033544ENSMUST00000114074ENSMUST00000118428ENSMUST00000124321ENSMUST00000133781ENSMUST00000151938ENSMUST00000152228ENSMUSG00000048709ENSMUST00000117517ENSMUSG00000082208ENSMUST00000121224ENSMUSG00000083093ENSMUST00000118725
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LJ_0001ENSG00000155959ENST00000286428ENST00000460509ENSG00000185515ENST00000330045ENST00000340647ENST00000369459ENST00000369462ENST00000453705ENST00000620502CIL_0003LJ_0002ENSMUSG00000031197ENSMUST00000033540ENSMUST00000114070ENSMUST00000123419ENSMUSG00000031201ENSMUST00000033544ENSMUST00000114074ENSMUST00000118428ENSMUST00000124321ENSMUST00000133781ENSMUST00000151938ENSMUST00000152228ENSMUSG00000048709ENSMUST00000117517ENSMUSG00000082208ENSMUST00000121224ENSMUSG00000083093ENSMUST00000118725
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155959 ENST00000286428 6.891±0.00 10.982±0.00 2.099±0.00 21.507±4.22 9.343±2.87 8.832±6.90 12.369±6.09 10.953±5.88 5.283±2.70 9.569±3.95 8.720±3.27 12.607±4.23 9.701±2.85 10.481±2.78
ENST00000460509 2.494±0.00 N/A 3.024±0.00 12.458±0.00 N/A N/A N/A N/A 4.194±0.00 N/A N/A N/A N/A 3.012±0.00
ENST00000535916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185515 ENST00000330045 N/A N/A 2.341±0.00 0.647±0.00 0.962±0.00 3.207±0.00 0.478±0.00 N/A 0.796±0.00 N/A N/A 1.358±0.00 N/A N/A
ENST00000340647 N/A N/A N/A 1.025±0.00 N/A 1.550±0.00 N/A N/A N/A N/A 1.658±0.00 N/A N/A N/A
ENST00000369459 N/A N/A N/A 0.830±0.57 1.049±0.00 2.130±0.00 3.568±0.00 N/A 0.871±0.00 0.190±0.00 2.219±0.00 N/A 2.482±0.00 1.584±0.00
ENST00000369462 N/A N/A N/A N/A 1.482±0.14 N/A 0.180±0.00 4.685±0.00 0.449±0.00 N/A N/A 1.784±0.64 1.752±0.44 0.187±0.00
ENST00000399026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000411985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453705 1.677±0.00 N/A N/A 0.498±0.00 N/A 0.960±0.00 N/A N/A N/A 0.496±0.00 0.872±0.07 1.573±0.29 2.587±0.28 0.328±0.00
ENST00000620502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.699±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031197 ENSMUST00000033540 3.056±0.62 1.291±0.73 15.132±2.36 28.457±12.73 2.882±0.47 2.072±0.79 5.412±0.38 4.417±1.31 11.958±11.34 5.502±1.47 14.902±0.87 4.780±5.88 11.464±6.65 1.284±0.35
ENSMUST00000114070 1.021±0.00 0.919±0.41 N/A N/A N/A N/A N/A N/A 0.726±0.00 N/A N/A 1.874±1.54 8.316±3.10 1.741±0.00
ENSMUST00000123419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.907±0.00 N/A N/A
ENSMUSG00000031201 ENSMUST00000033544 1.537±0.29 1.600±1.11 2.628±0.03 3.272±1.60 1.226±0.61 0.932±0.46 1.162±0.18 2.211±0.42 3.649±1.62 2.408±0.35 1.652±0.22 1.322±0.77 0.972±0.54 0.304±0.17
ENSMUST00000114074 1.971±0.27 N/A 3.565±0.05 3.078±0.12 1.331±0.12 2.296±0.98 2.214±1.02 3.045±0.58 2.982±1.20 1.700±0.26 1.216±0.24 1.141±0.49 1.268±0.66 0.422±0.10
ENSMUST00000118428 N/A N/A N/A N/A 1.229±0.00 N/A N/A N/A 1.574±0.00 N/A N/A 0.307±0.00 N/A 0.232±0.13
ENSMUST00000124321 0.735±0.00 N/A 1.224±0.00 N/A 0.644±0.24 1.005±0.36 N/A N/A 1.316±0.00 N/A N/A 1.146±0.37 0.650±0.37 0.047±0.00
ENSMUST00000133781 N/A 1.596±0.07 N/A 19.388±0.00 4.937±1.78 2.040±0.54 5.223±0.10 N/A 3.962±0.00 N/A 7.558±0.63 14.858±0.00 17.394±12.63 0.904±0.09
ENSMUST00000151938 N/A 0.552±0.19 N/A N/A 0.434±0.04 0.568±0.19 N/A N/A N/A N/A N/A 0.933±0.27 0.343±0.00 0.095±0.06
ENSMUST00000152228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.683±0.00 N/A N/A
ENSMUSG00000048709 ENSMUST00000117517 N/A 0.720±0.26 0.359±0.13 0.605±0.00 0.306±0.00 0.944±0.00 N/A N/A 0.140±0.02 N/A N/A 0.728±0.17 0.387±0.21 N/A
ENSMUSG00000082208 ENSMUST00000121224 N/A N/A 0.068±0.00 N/A 0.083±0.00 N/A N/A 0.073±0.00 0.037±0.02 0.102±0.00 N/A 0.177±0.12 0.029±0.01 0.060±0.00
ENSMUSG00000083093 ENSMUST00000118725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00

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