C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: von Hippel-Lindau binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033540 Vbp1-001 ENSMUSG00000031197 10090 + X:75514299-75534942 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033540 3.056±0.62 1.291±0.73 15.132±2.36 28.457±12.73 2.882±0.47 2.072±0.79 5.412±0.38 4.417±1.31 11.958±11.34 5.502±1.47 14.902±0.87 4.780±5.88 11.464±6.65 1.284±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LJ CIL_0003LJ_0002 CGP X:75416628-75534942
CIL_0003LK CIL_0003LK_0002 CGP X:75514299-75578231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0006457 IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286428 VBP1-001 protein_coding Homo_sapiens 0 1210
ENST00000460509 VBP1-003 retained_intron Homo_sapiens 0 610
ENST00000535916 VBP1-002 protein_coding Homo_sapiens 0 817

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