C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004326 Plxna3-001 ENSMUSG00000031398 10090 + X:74329066-74344689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004326
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004326 4.081±2.64 3.625±0.94 1.965±0.05 28.748±19.26 4.310±1.08 2.534±0.42 0.233±0.17 0.720±0.36 0.604±0.46 1.789±0.14 0.103±0.07 8.945±3.05 0.606±0.43 0.206±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K8 CIL_0006K8_0002 CGP X:74313033-74344689
CIL_0003LD CIL_0003LD_0002 CGP X:74329066-74353618

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0007411 IMP axon guidance
GO:0016021 IEA integral component of membrane
GO:0017154 IMP semaphorin receptor activity
GO:0021612 IMP facial nerve structural organization
GO:0021637 IMP trigeminal nerve structural organization
GO:0021766 IMP hippocampus development
GO:0021785 IMP branchiomotor neuron axon guidance
GO:0021860 IMP pyramidal neuron development
GO:0048843 IGI negative regulation of axon extension involved in axon guidance
GO:0050919 IGI negative chemotaxis
GO:0051495 IMP positive regulation of cytoskeleton organization
GO:1902287 IMP semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016230 plxna4-001 protein_coding Danio_rerio 0 597
ENST00000321063 PLXNA4-201 protein_coding Homo_sapiens 0 931
ENST00000359827 PLXNA4-001 protein_coding Homo_sapiens 0 931
ENST00000367033 PLXNA2-001 protein_coding Homo_sapiens 0 1077
ENST00000369682 PLXNA3-001 protein_coding Homo_sapiens 0 6429
ENST00000393409 PLXNA1-001 protein_coding Homo_sapiens 0 1419
ENST00000463510 PLXNA2-004 processed_transcript Homo_sapiens 0 289
ENST00000467463 PLXNA3-005 processed_transcript Homo_sapiens 0 364
ENST00000482598 PLXNA3-009 retained_intron Homo_sapiens 0 241
ENST00000493546 PLXNA3-007 processed_transcript Homo_sapiens 0 809
ENST00000495040 PLXNA3-008 processed_transcript Homo_sapiens 0 357
ENST00000496550 PLXNA4-005 retained_intron Homo_sapiens 0 337
ENST00000497802 PLXNA3-002 retained_intron Homo_sapiens 0 520
ENST00000503234 PLXNA1-002 retained_intron Homo_sapiens 0 977
ENST00000505278 PLXNA1-004 processed_transcript Homo_sapiens 0 298

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