C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 1 (class I)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033878 Rab11fip1-201 ENSMUSG00000031488 10090 - 8:27138773-27174646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033878 0.612±0.47 1.636±0.39 3.908±0.11 0.147±0.04 1.256±0.54 11.824±1.28 0.166±0.06 2.307±0.33 0.854±0.34 11.539±0.72 0.029±0.02 2.056±0.95 2.175±1.03 1.419±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0002 VISTA 8:26613996-27214881
CIL_0009C5 CIL_0009C5_0002 VISTA 8:26806327-27408431
CIL_0007QT CIL_0007QT_0002 VISTA 8:26806345-27408424
CIL_0003YX CIL_0003YX_0003 CGP 8:27123832-27174646
CIL_0002IQ CIL_0002IQ_0002 CGP 8:27138773-27202547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005768 IEA endosome
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287263 RAB11FIP1-001 protein_coding Homo_sapiens 0 1650
ENST00000330843 RAB11FIP1-002 protein_coding Homo_sapiens 0 1347
ENST00000522727 RAB11FIP1-008 protein_coding Homo_sapiens 0 198

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