C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 1 (class I)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054212 Rab11fip1-202 ENSMUSG00000031488 10090 - 8:27138773-27174646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054212 0.743±0.62 0.267±0.06 4.063±0.07 0.090±0.02 0.942±0.19 6.164±2.06 0.175±0.10 1.288±0.10 0.444±0.15 6.714±0.32 0.044±0.02 0.966±0.28 2.725±1.48 0.698±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0002 VISTA 8:26613996-27214881
CIL_0009C5 CIL_0009C5_0002 VISTA 8:26806327-27408431
CIL_0007QT CIL_0007QT_0002 VISTA 8:26806345-27408424
CIL_0003YX CIL_0003YX_0003 CGP 8:27123832-27174646
CIL_0002IQ CIL_0002IQ_0002 CGP 8:27138773-27202547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287263 RAB11FIP1-001 protein_coding Homo_sapiens 0 1347
ENST00000330843 RAB11FIP1-002 protein_coding Homo_sapiens 0 1463
ENST00000522727 RAB11FIP1-008 protein_coding Homo_sapiens 0 198

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