C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatidic acid phosphatase type 2 domain containing 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031570 Ppapdc1b 10090 + 8:25720061-25724887 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068916 Ppapdc1b-001 25720064-25724887 protein_coding
  ENSMUST00000124764 Ppapdc1b-002 25720061-25724887 nonsense_mediated_decay
  ENSMUST00000133117 Ppapdc1b-004 25720064-25724887 retained_intron
  ENSMUST00000138548 Ppapdc1b-007 25720456-25724887 processed_transcript
  ENSMUST00000138879 Ppapdc1b-008 25720100-25722151 retained_intron
  ENSMUST00000139120 Ppapdc1b-006 25720382-25724883 retained_intron
  ENSMUST00000139836 Ppapdc1b-005 25720064-25724887 protein_coding
  ENSMUST00000145678 Ppapdc1b-003 25720061-25724887 nonsense_mediated_decay
  ENSMUST00000146762 Ppapdc1b-010 25722958-25724448 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068916ENSMUST00000124764ENSMUST00000133117ENSMUST00000138548ENSMUST00000139120ENSMUST00000139836ENSMUST00000145678ENSMUST00000146762
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068916 23.916±2.00 15.661±2.85 16.348±7.46 5.266±0.00 19.025±2.76 48.370±8.05 4.852±1.85 5.998±1.84 16.425±10.15 17.967±2.40 0.663±0.29 26.005±3.68 21.733±0.67 3.027±0.51
ENSMUST00000124764 N/A N/A 3.986±0.00 1.914±1.17 N/A N/A N/A N/A 15.060±0.00 N/A 0.396±0.03 N/A N/A N/A
ENSMUST00000133117 7.836±1.00 6.488±0.74 9.871±5.22 5.321±0.00 4.671±1.15 15.333±4.06 1.930±0.46 2.480±0.58 6.085±2.81 5.246±1.02 0.639±0.21 7.708±3.14 6.124±3.10 1.044±0.46
ENSMUST00000138548 N/A N/A N/A N/A 16.158±0.00 N/A N/A N/A N/A N/A N/A 6.880±0.08 9.322±5.57 0.067±0.00
ENSMUST00000139120 5.474±0.21 N/A 2.822±0.00 1.831±0.96 3.385±0.73 N/A 1.299±0.00 N/A 7.222±0.00 N/A 0.660±0.15 1.945±0.31 4.915±2.21 1.053±0.04
ENSMUST00000139836 8.643±0.56 7.675±0.80 N/A N/A 5.708±0.54 18.033±3.59 4.980±0.39 7.749±1.21 15.874±7.38 6.861±0.38 0.494±0.00 9.960±2.68 9.157±4.51 0.992±0.07
ENSMUST00000145678 N/A 4.679±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.716±0.00 N/A N/A N/A
ENSMUST00000146762 N/A N/A N/A N/A 12.224±0.00 N/A N/A N/A N/A N/A N/A 9.187±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H7 CIL_0008H7_0002 VISTA 8:25139932-25741457
CIL_0008SM CIL_0008SM_0002 VISTA 8:25140188-25742103
CIL_0008NR CIL_0008NR_0002 VISTA 8:25243011-25845762

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008195 ISS phosphatidate phosphatase activity
GO:0016021 IEA integral component of membrane
GO:0046839 ISS phospholipid dephosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057672 ppapdc1b phosphatidic acid phosphatase type 2 domain containing 1B protein_coding Danio_rerio
ENSG00000147535 PPAPDC1B phosphatidic acid phosphatase type 2 domain containing 1B protein_coding Homo_sapiens

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