C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidic acid phosphatase type 2 domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139836 Ppapdc1b-005 ENSMUSG00000031570 10090 + 8:25720064-25724887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139836
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139836 8.643±0.56 7.675±0.80 5.708±0.54 18.033±3.59 4.980±0.39 7.749±1.21 15.874±7.38 6.861±0.38 0.494±0.00 9.960±2.68 9.157±4.51 0.992±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H7 CIL_0008H7_0002 VISTA 8:25139932-25741457
CIL_0008SM CIL_0008SM_0002 VISTA 8:25140188-25742103
CIL_0008NR CIL_0008NR_0002 VISTA 8:25243011-25845762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008195 ISS phosphatidate phosphatase activity
GO:0016021 IEA integral component of membrane
GO:0046839 ISS phospholipid dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000419686 PPAPDC1B-003 protein_coding Homo_sapiens 0 460
ENST00000422581 PPAPDC1B-002 protein_coding Homo_sapiens 0 717
ENST00000424479 PPAPDC1B-001 protein_coding Homo_sapiens 0 715
ENST00000524616 PPAPDC1B-007 protein_coding Homo_sapiens 0 523
ENST00000527793 PPAPDC1B-014 processed_transcript Homo_sapiens 0 244
ENST00000528814 PPAPDC1B-004 retained_intron Homo_sapiens 0 246
ENST00000529359 PPAPDC1B-005 protein_coding Homo_sapiens 0 686
ENST00000530193 PPAPDC1B-013 processed_transcript Homo_sapiens 0 339
ENST00000530432 PPAPDC1B-012 retained_intron Homo_sapiens 0 255
ENST00000531109 PPAPDC1B-016 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000531483 PPAPDC1B-009 processed_transcript Homo_sapiens 4e-39 165
ENST00000531823 PPAPDC1B-015 protein_coding Homo_sapiens 0 575
ENST00000534339 PPAPDC1B-006 protein_coding Homo_sapiens 0 460

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