C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcriptional regulator, SIN3B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004494 Sin3b-201 ENSMUSG00000031622 10090 + 8:72723288-72758203 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004494
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004494 10.007±1.78 17.143±0.55 10.675±0.49 22.327±6.75 8.258±2.79 10.674±2.40 4.122±0.85 7.715±0.64 3.617±0.74 11.878±1.53 2.439±0.24 20.637±8.28 43.166±26.64 8.847±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006G2 CIL_0006G2_0002 CGP 8:72646711-72758203
CIL_0006GJ CIL_0006GJ_0002 CGP 8:72723288-72763874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000805 IDA X chromosome
GO:0000806 IDA Y chromosome
GO:0001741 IDA XY body
GO:0003682 IDA chromatin binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007519 IDA skeletal muscle tissue development
GO:0030849 IDA autosome
GO:0045786 TAS negative regulation of cell cycle
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048738 IDA cardiac muscle tissue development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000248054 SIN3B-001 protein_coding Homo_sapiens 0 2152
ENST00000379803 SIN3B-003 protein_coding Homo_sapiens 0 1327
ENST00000594235 SIN3B-005 processed_transcript Homo_sapiens 0 568
ENST00000594372 SIN3B-008 retained_intron Homo_sapiens 0 702
ENST00000595049 SIN3B-010 retained_intron Homo_sapiens 0 832
ENST00000595541 SIN3B-004 protein_coding Homo_sapiens 0 1327
ENST00000595900 SIN3B-012 processed_transcript Homo_sapiens 0 457
ENST00000596638 SIN3B-006 protein_coding Homo_sapiens 0 726
ENST00000596802 SIN3B-002 protein_coding Homo_sapiens 0 1044
ENST00000601141 SIN3B-011 retained_intron Homo_sapiens 0 573
ENST00000602204 SIN3B-009 retained_intron Homo_sapiens 0 335

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