C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcriptional regulator, SIN3B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109950 Sin3b-202 ENSMUSG00000031622 10090 + 8:72723288-72739910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109950 51.785±17.41 109.187±23.49 40.429±6.56 44.778±4.28 48.453±2.62 30.141±12.80 29.834±4.26 52.571±3.70 34.965±10.83 20.161±8.86 11.556±1.00 73.591±21.57 758.729±379.11 163.133±36.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006G2 CIL_0006G2_0002 CGP 8:72646711-72758203
CIL_0006GJ CIL_0006GJ_0002 CGP 8:72723288-72763874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000805 IDA X chromosome
GO:0000806 IDA Y chromosome
GO:0001741 IDA XY body
GO:0003682 IDA chromatin binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007519 IDA skeletal muscle tissue development
GO:0030849 IDA autosome
GO:0045786 TAS negative regulation of cell cycle
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048738 IDA cardiac muscle tissue development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000248054 SIN3B-001 protein_coding Homo_sapiens 0 817
ENST00000379803 SIN3B-003 protein_coding Homo_sapiens 0 817
ENST00000596802 SIN3B-002 protein_coding Homo_sapiens 0 817

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