C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre B cell leukemia homeobox 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031860 Pbx4 10090 + 8:69832491-69872292 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081503 Pbx4-004 69832491-69872292 protein_coding
  ENSMUST00000131637 Pbx4-007 69832660-69870686 protein_coding
  ENSMUST00000132259 Pbx4-006 69848039-69864977 processed_transcript
  ENSMUST00000132899 Pbx4-003 69832662-69872292 nonsense_mediated_decay
  ENSMUST00000134777 Pbx4-001 69832690-69872292 nonsense_mediated_decay
  ENSMUST00000135952 Pbx4-009 69866285-69872292 retained_intron
  ENSMUST00000151975 Pbx4-005 69832624-69859398 retained_intron
  ENSMUST00000156251 Pbx4-008 69866111-69870638 retained_intron
  ENSMUST00000156319 Pbx4-002 69832637-69872292 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081503ENSMUST00000131637ENSMUST00000132259ENSMUST00000132899ENSMUST00000134777ENSMUST00000135952ENSMUST00000151975ENSMUST00000156251ENSMUST00000156319
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081503 0.090±0.00 N/A N/A N/A 0.216±0.05 0.115±0.04 0.051±0.01 0.170±0.05 0.156±0.13 0.334±0.00 N/A 0.314±0.12 0.267±0.09 47.208±19.39
ENSMUST00000131637 N/A 1.470±0.50 N/A 8.213±0.00 1.230±0.00 0.804±0.13 0.273±0.00 1.025±0.00 0.562±0.21 N/A N/A 2.934±0.85 1.360±0.00 N/A
ENSMUST00000132259 N/A N/A N/A N/A N/A 1.750±0.00 N/A N/A N/A N/A N/A 5.084±0.00 N/A N/A
ENSMUST00000132899 N/A 0.722±0.12 N/A N/A 0.637±0.00 0.509±0.08 N/A 0.306±0.09 0.144±0.02 0.701±0.00 0.045±0.00 0.613±0.24 0.296±0.00 N/A
ENSMUST00000134777 N/A N/A 0.318±0.00 3.732±0.00 0.724±0.00 N/A N/A 0.281±0.01 0.339±0.10 N/A 0.070±0.00 0.437±0.00 0.678±0.24 N/A
ENSMUST00000135952 N/A N/A N/A N/A N/A N/A N/A 0.420±0.12 N/A N/A 0.200±0.00 0.471±0.00 0.234±0.08 N/A
ENSMUST00000151975 N/A 0.582±0.15 N/A N/A 0.717±0.00 N/A N/A N/A N/A N/A N/A 0.724±0.08 N/A N/A
ENSMUST00000156251 N/A N/A 0.409±0.00 N/A N/A N/A 0.139±0.04 N/A 0.413±0.06 N/A 0.065±0.00 0.499±0.00 0.309±0.08 N/A
ENSMUST00000156319 N/A 0.632±0.17 0.352±0.00 N/A N/A 0.119±0.00 0.060±0.00 N/A N/A 0.734±0.00 0.112±0.04 0.356±0.05 0.630±0.21 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001741 IDA XY body
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IC regulation of transcription from RNA polymerase II promoter
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IC positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052150 pbx4 pre-B-cell leukemia transcription factor 4 protein_coding Danio_rerio
ENSDARG00000091547 PBX4 (2 of 2) pre-B-cell leukemia homeobox 4 protein_coding Danio_rerio
ENSG00000105717 PBX4 pre-B-cell leukemia homeobox 4 protein_coding Homo_sapiens

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