C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre B cell leukemia homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081503 Pbx4-004 ENSMUSG00000031860 10090 + 8:69832491-69872292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000081503
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000081503 0.090±0.00 0.216±0.05 0.115±0.04 0.051±0.01 0.170±0.05 0.156±0.13 0.334±0.00 0.314±0.12 0.267±0.09 47.208±19.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001741 IDA XY body
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IC regulation of transcription from RNA polymerase II promoter
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IC positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000003750 pbx1a-201 protein_coding Danio_rerio 0 298
ENSDART00000073947 pbx1a-203 protein_coding Danio_rerio 0 298
ENSDART00000038419 pbx1a-202 protein_coding Danio_rerio 0 252
ENST00000251203 PBX4-001 protein_coding Homo_sapiens 0 966
ENST00000375050 PBX2-001 protein_coding Homo_sapiens 0 462
ENST00000383270 PBX2-001 protein_coding Homo_sapiens 0 462
ENST00000420432 PBX2-001 protein_coding Homo_sapiens 0 462
ENST00000431537 PBX2-001 protein_coding Homo_sapiens 0 462
ENST00000433552 PBX2-001 protein_coding Homo_sapiens 0 462
ENST00000453487 PBX2-001 protein_coding Homo_sapiens 0 462
ENST00000453961 PBX2-001 protein_coding Homo_sapiens 0 462
ENST00000461385 PBX2-002 retained_intron Homo_sapiens 0 462
ENST00000478678 PBX2-002 retained_intron Homo_sapiens 0 462
ENST00000480293 PBX2-002 retained_intron Homo_sapiens 0 462
ENST00000485304 PBX2-002 retained_intron Homo_sapiens 0 462
ENST00000489815 PBX2-002 retained_intron Homo_sapiens 0 462
ENST00000493219 PBX2P1-001 processed_pseudogene Homo_sapiens 0 442
ENST00000494630 PBX2-002 retained_intron Homo_sapiens 0 462
ENST00000498292 PBX2-002 retained_intron Homo_sapiens 0 462
ENST00000557978 PBX4-003 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000558222 PBX4-002 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000559735 PBX4-005 retained_intron Homo_sapiens 0 283

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