C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-B-cell leukemia homeobox 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105717 PBX4 9606 - 19:19561707-19618916 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251203 PBX4-001 19561713-19618916 protein_coding
  ENST00000557978 PBX4-003 19561707-19618693 nonsense_mediated_decay
  ENST00000558222 PBX4-002 19564775-19618681 nonsense_mediated_decay
  ENST00000558276 PBX4-004 19561707-19563824 retained_intron
  ENST00000559735 PBX4-005 19570226-19579954 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000251203ENST00000557978ENST00000558222ENST00000558276ENST00000559735
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000251203 N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A 0.263±0.00 0.362±0.00 N/A
ENST00000557978 0.219±0.00 1.007±0.00 N/A N/A 0.149±0.00 0.103±0.00 N/A 0.092±0.00 1.148±0.00 0.935±0.77 0.080±0.00 4.042±0.00
ENST00000558222 0.120±0.00 N/A 0.380±0.00 0.082±0.00 0.119±0.02 N/A N/A 0.292±0.16 N/A 0.935±0.70 0.463±0.21 4.084±0.00
ENST00000558276 0.673±0.00 3.965±0.00 N/A 0.850±0.00 0.595±0.00 N/A 0.312±0.00 N/A 1.268±0.00 1.041±0.26 N/A 1.881±0.00
ENST00000559735 N/A N/A N/A 0.051±0.00 0.493±0.00 N/A N/A N/A 0.915±0.00 N/A 0.242±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NP CIL_0004NP_0002 CGP 19:19561707-19628930

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001741 IEA XY body
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0043565 ISS sequence-specific DNA binding
GO:0045893 IC positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052150 pbx4 pre-B-cell leukemia transcription factor 4 protein_coding Danio_rerio
ENSDARG00000091547 PBX4 (2 of 2) pre-B-cell leukemia homeobox 4 protein_coding Danio_rerio
ENSMUSG00000031860 Pbx4 pre B cell leukemia homeobox 4 protein_coding Mus_musculus

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