C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre B cell leukemia homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156319 Pbx4-002 ENSMUSG00000031860 10090 + 8:69832637-69872292 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonHeartLungMuscleOvaryPlacentaENSMUST00000156319
Transcript ID Adrenal Bladder Colon Heart Lung Muscle Ovary Placenta
ENSMUST00000156319 0.632±0.17 0.352±0.00 0.119±0.00 0.060±0.00 0.734±0.00 0.112±0.04 0.356±0.05 0.630±0.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001741 IDA XY body
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251203 PBX4-001 protein_coding Homo_sapiens 0 427
ENST00000375050 PBX2-001 protein_coding Homo_sapiens 6e-30 137
ENST00000383270 PBX2-001 protein_coding Homo_sapiens 6e-30 137
ENST00000420432 PBX2-001 protein_coding Homo_sapiens 6e-30 137
ENST00000431537 PBX2-001 protein_coding Homo_sapiens 6e-30 137
ENST00000433552 PBX2-001 protein_coding Homo_sapiens 6e-30 137
ENST00000453487 PBX2-001 protein_coding Homo_sapiens 6e-30 137
ENST00000453961 PBX2-001 protein_coding Homo_sapiens 6e-30 137
ENST00000461385 PBX2-002 retained_intron Homo_sapiens 2e-30 137
ENST00000478678 PBX2-002 retained_intron Homo_sapiens 2e-30 137
ENST00000480293 PBX2-002 retained_intron Homo_sapiens 2e-30 137
ENST00000485304 PBX2-002 retained_intron Homo_sapiens 2e-30 137
ENST00000489815 PBX2-002 retained_intron Homo_sapiens 2e-30 137
ENST00000493219 PBX2P1-001 processed_pseudogene Homo_sapiens 1e-28 132
ENST00000494630 PBX2-002 retained_intron Homo_sapiens 2e-30 137
ENST00000498292 PBX2-002 retained_intron Homo_sapiens 2e-30 137
ENST00000557978 PBX4-003 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000558222 PBX4-002 nonsense_mediated_decay Homo_sapiens 0 363

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