C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre B cell leukemia homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132899 Pbx4-003 ENSMUSG00000031860 10090 + 8:69832662-69872292 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000132899
Transcript ID Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000132899 0.722±0.12 0.637±0.00 0.509±0.08 0.306±0.09 0.144±0.02 0.701±0.00 0.045±0.00 0.613±0.24 0.296±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001741 IDA XY body
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IC regulation of transcription from RNA polymerase II promoter
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IC positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251203 PBX4-001 protein_coding Homo_sapiens 0 209
ENST00000375050 PBX2-001 protein_coding Homo_sapiens 2e-30 139
ENST00000383270 PBX2-001 protein_coding Homo_sapiens 2e-30 139
ENST00000420432 PBX2-001 protein_coding Homo_sapiens 2e-30 139
ENST00000431537 PBX2-001 protein_coding Homo_sapiens 2e-30 139
ENST00000433552 PBX2-001 protein_coding Homo_sapiens 2e-30 139
ENST00000453487 PBX2-001 protein_coding Homo_sapiens 2e-30 139
ENST00000453961 PBX2-001 protein_coding Homo_sapiens 2e-30 139
ENST00000461385 PBX2-002 retained_intron Homo_sapiens 6e-31 139
ENST00000478678 PBX2-002 retained_intron Homo_sapiens 6e-31 139
ENST00000480293 PBX2-002 retained_intron Homo_sapiens 6e-31 139
ENST00000485304 PBX2-002 retained_intron Homo_sapiens 6e-31 139
ENST00000489815 PBX2-002 retained_intron Homo_sapiens 6e-31 139
ENST00000493219 PBX2P1-001 processed_pseudogene Homo_sapiens 3e-29 134
ENST00000494630 PBX2-002 retained_intron Homo_sapiens 6e-31 139
ENST00000498292 PBX2-002 retained_intron Homo_sapiens 6e-31 139
ENST00000557978 PBX4-003 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000558222 PBX4-002 nonsense_mediated_decay Homo_sapiens 0 209

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