C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family G (WHITE), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032131 Abcg4 10090 - 9:44273188-44288615 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034648 Abcg4-003 44273188-44287544 protein_coding
  ENSMUST00000085979 Abcg4-004 44274452-44279838 retained_intron
  ENSMUST00000159385 Abcg4-005 44273188-44278614 retained_intron
  ENSMUST00000159997 Abcg4-009 44277503-44279791 retained_intron
  ENSMUST00000160323 Abcg4-002 44277071-44287536 processed_transcript
  ENSMUST00000160384 Abcg4-007 44281909-44288138 protein_coding
  ENSMUST00000161206 Abcg4-008 44280648-44281658 retained_intron
  ENSMUST00000161354 Abcg4-001 44273190-44288615 protein_coding
  ENSMUST00000161408 Abcg4-006 44281846-44288357 protein_coding
  ENSMUST00000162783 Abcg4-010 44275095-44279600 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034648ENSMUST00000085979ENSMUST00000159385ENSMUST00000160323ENSMUST00000160384ENSMUST00000161206ENSMUST00000161354ENSMUST00000161408ENSMUST00000162783
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034648 0.939±0.49 5.835±1.23 1.138±0.28 2.873±0.86 N/A 0.885±0.11 0.214±0.10 0.118±0.04 4.278±2.69 0.124±0.05 0.214±0.12 2.204±1.17 0.322±0.00 0.108±0.00
ENSMUST00000085979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00 1.738±0.00 N/A N/A
ENSMUST00000159385 0.530±0.35 5.180±0.09 N/A N/A 0.202±0.05 0.686±0.00 N/A 0.026±0.00 1.158±1.97 0.080±0.00 0.130±0.01 1.252±0.81 0.205±0.18 0.046±0.03
ENSMUST00000160323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.943±0.00 N/A N/A
ENSMUST00000160384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.791±0.00 N/A
ENSMUST00000161206 N/A N/A N/A N/A 0.749±0.00 N/A N/A N/A 0.051±0.00 N/A 0.245±0.00 N/A 0.366±0.00 N/A
ENSMUST00000161354 1.068±0.35 8.051±1.00 1.344±0.01 5.361±2.32 0.275±0.08 0.541±0.19 0.058±0.00 0.061±0.00 9.365±4.86 0.162±0.02 N/A 2.149±0.78 0.819±0.21 0.144±0.06
ENSMUST00000161408 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.455±0.00 N/A N/A N/A N/A
ENSMUST00000162783 N/A N/A N/A N/A 1.257±0.00 N/A N/A N/A N/A 0.335±0.00 0.261±0.10 N/A 0.082±0.00 0.176±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Q2 CIL_0006Q2_0002 CGP 9:44252713-44288615

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0042803 IEA protein homodimerization activity
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061047 abcg4a ATP-binding cassette, sub-family G (WHITE), member 4a protein_coding Danio_rerio
ENSDARG00000078068 abcg4b ATP-binding cassette, sub-family G (WHITE), member 4b protein_coding Danio_rerio
ENSG00000172350 ABCG4 ATP-binding cassette, sub-family G (WHITE), member 4 protein_coding Homo_sapiens

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