C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stimulated by retinoic acid gene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170397 Stra6-202 ENSMUSG00000032327 10090 + 9:58134075-58153996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonLiverMuscleOvaryTestisENSMUST00000170397
Transcript ID Adipose Bladder Breast Colon Liver Muscle Ovary Testis
ENSMUST00000170397 8.778±0.25 0.049±0.00 0.634±0.02 0.219±0.00 0.015±0.00 0.164±0.00 2.883±1.66 0.215±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834
CIL_00029J CIL_00029J_0002 CGP 9:58006411-58118823
CIL_00045Q CIL_00045Q_0002 CGP 9:58028677-58153996
CIL_00045T CIL_00045T_0002 CGP 9:58063788-58159221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0001822 IEA kidney development
GO:0003184 IEA pulmonary valve morphogenesis
GO:0003281 IEA ventricular septum development
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007507 IEA heart development
GO:0007612 IEA learning
GO:0007631 IEA feeding behavior
GO:0016021 IEA integral component of membrane
GO:0030324 IEA lung development
GO:0030325 IEA adrenal gland development
GO:0030540 IEA female genitalia development
GO:0034633 IGI retinol transport
GO:0042297 IEA vocal learning
GO:0042573 IEA retinoic acid metabolic process
GO:0043234 IEA protein complex
GO:0043583 IEA ear development
GO:0043585 IEA nose morphogenesis
GO:0046427 IMP positive regulation of JAK-STAT cascade
GO:0048286 IEA lung alveolus development
GO:0048520 IEA positive regulation of behavior
GO:0048546 IEA digestive tract morphogenesis
GO:0048566 IEA embryonic digestive tract development
GO:0048589 IEA developmental growth
GO:0048745 IEA smooth muscle tissue development
GO:0048844 IEA artery morphogenesis
GO:0050890 IEA cognition
GO:0050905 IEA neuromuscular process
GO:0051183 IEA vitamin transporter activity
GO:0060322 IEA head development
GO:0060323 IEA head morphogenesis
GO:0060325 IEA face morphogenesis
GO:0060426 IEA lung vasculature development
GO:0060539 IEA diaphragm development
GO:0060900 IEA embryonic camera-type eye formation
GO:0061029 IEA eyelid development in camera-type eye
GO:0061038 IEA uterus morphogenesis
GO:0061143 IEA alveolar primary septum development
GO:0061156 IEA pulmonary artery morphogenesis
GO:0061205 IEA paramesonephric duct development
GO:0071939 IEA vitamin A import
GO:0097070 IEA ductus arteriosus closure

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323940 STRA6-002 protein_coding Homo_sapiens 0 1386
ENST00000395105 STRA6-001 protein_coding Homo_sapiens 0 1386
ENST00000416286 STRA6-009 protein_coding Homo_sapiens 0 1308
ENST00000423167 STRA6-007 protein_coding Homo_sapiens 0 1260
ENST00000432245 STRA6-003 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000449139 STRA6-010 protein_coding Homo_sapiens 0 1386
ENST00000535552 STRA6-008 protein_coding Homo_sapiens 0 1386
ENST00000545137 STRA6-006 retained_intron Homo_sapiens 0 1120
ENST00000563965 STRA6-005 protein_coding Homo_sapiens 0 1386
ENST00000569936 STRA6-004 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000573214 STRA6-020 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000574278 STRA6-011 protein_coding Homo_sapiens 0 1386
ENST00000574439 STRA6-012 processed_transcript Homo_sapiens 0 1349
ENST00000616000 STRA6-201 protein_coding Homo_sapiens 0 1386

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