C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stimulated by retinoic acid gene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167479 Stra6-201 ENSMUSG00000032327 10090 + 9:58134665-58153996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaENSMUST00000167479
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta
ENSMUST00000167479 4.271±0.00 0.320±0.00 1.950±0.62 0.586±0.00 0.368±0.07 1.913±0.00 0.019±0.00 2.682±0.23 1.467±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834
CIL_00029J CIL_00029J_0002 CGP 9:58006411-58118823
CIL_00045Q CIL_00045Q_0002 CGP 9:58028677-58153996
CIL_00045T CIL_00045T_0002 CGP 9:58063788-58159221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0034633 IGI retinol transport
GO:0046427 IMP positive regulation of JAK-STAT cascade
GO:0051183 IEA vitamin transporter activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323940 STRA6-002 protein_coding Homo_sapiens 0 1386
ENST00000395105 STRA6-001 protein_coding Homo_sapiens 0 1386
ENST00000416286 STRA6-009 protein_coding Homo_sapiens 0 1308
ENST00000423167 STRA6-007 protein_coding Homo_sapiens 0 1260
ENST00000432245 STRA6-003 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000449139 STRA6-010 protein_coding Homo_sapiens 0 1386
ENST00000535552 STRA6-008 protein_coding Homo_sapiens 0 1386
ENST00000545137 STRA6-006 retained_intron Homo_sapiens 0 1120
ENST00000563965 STRA6-005 protein_coding Homo_sapiens 0 1386
ENST00000569936 STRA6-004 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000573214 STRA6-020 retained_intron Homo_sapiens 2.8026e-45 185
ENST00000574278 STRA6-011 protein_coding Homo_sapiens 0 1386
ENST00000574439 STRA6-012 processed_transcript Homo_sapiens 0 1349
ENST00000616000 STRA6-201 protein_coding Homo_sapiens 0 1386

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